BAC Information

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BAC

Clone NameMSMg01-328E09
Chromosome2 (Build37)
Map Location 120,824,408 - 120,999,628
singlet/doubletdoublet
Overlap geneTmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e
Upstream geneMapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1
Downstream geneTrp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328E09.T7 (MSMg01no328_e09.b1)MSMg01-328E09.TJ (MSMg01no328_e09.g1)
ACCAG445414AG445415
length806791
length of high quality
(start - end)
282 (43 - 324)250 (72 - 321)
definitionCHROMAT_FILE: MSMg01no328_e09.b1 PHD_FILE: MSMg01no328_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:23 2005CHROMAT_FILE: MSMg01no328_e09.g1 PHD_FILE: MSMg01no328_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,824,408 - 120,824,684)(120,999,379 - 120,999,628)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAA
TTCTGCACCCTCTTCCCTGGAGAGCAAAGTGGGTGATGTGAGGATGTGTG
CTAATCCTCAGCACATAGCCGGTCCCTCCGGCACCTATCCCCCTCCTTAA
TGGCTTCCTAAAGCTTGTCACCAATCACAGGTGACATTCTCTCCACTCAC
CACCTCACAGTTGTTTCAGGAACTTCTGTCTACAGCCAAGCATTTAAACA
GGAAGTGATTTACTATTTTCTATTATCGTTTATAAAATTATAAAAGTCTT
AGTAGTTACTGGAGAACAGAGGACGATTAAGACTAAAACACGGGTTTCAT
ATCGCGCCACGTGCATTTCTGTTAATGAAGCCAGTATGAAAGCCTTGACT
GGAGCCATGTTTGTTTGTACTAACACCCCAANGAAAATTGTANNTGAAGG
CCCGGGCCCTGTTTGTGATGATTGTGCTGACCCAAACTCAACAAACTGAT
TACATTCTTATATACTACCTTACATAAAGTTTAACTGGCTATTATACCCT
GACTCCCCTTATCCCTATACATGTCGACAGAATCTCCTCGATGCATTCTA
TCATTATCATTATATTCAATAATATTCAGTTTATTTTACCTCCTTTTTTA
CTGAAAAGACACAATTTCATAACTTCTATTAATTTAATTTTAATACATGA
TAGGATCTCCTCTAAATCTCTCTCGCCAGCTTATTATAAATTCAATAAAT
ATAAAACCATTATAATTCTACTCATATATTCAACCACTTAAACTACTTCT
TATTTN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATTACATAAAATCTGTGTAAGAACATG
AGTAGAGTTTTTGTTGTTACCCAAGAAAAGTCAGAGATCTTGCCTTCCCT
TGAGCATTTCCAGTGATTCATAAACTCAGGAGTATTCCAGAAATTTCTAA
CTTGCTTTACCAGTGAATTCACTGCCTGATAGCACTCCTGCCCTGTAGAA
GCCCATATCCAGATAACAGGATCTCACCTGTTGCTGCACATGGCCTGTAT
ACTGTTCAATGAACTCAGTGAATTTTTTTGTAGTCTGTGCCAAGCCGGCT
GAGTCGATTCATTATAATACCCCCCCTGCCCTGAATAAATGGAAAATCCT
GGGATTTTTGTTTATTTTAACTANCCCCCCCCCNAAAAATAATGTATGTT
AGCTTCCAATCTTAAAGGTTGTTAATGTCTGGCAAACCACCAATCTACGT
CTCTTTGATTCCTTATAATGCTTTCTATTCCTTTTTTCTAATTACTTTCA
CAAATTTTGCCCCGTTTCATTATTGTATTTAAACACTTATATTAATACAT
GATCTTAAAATTTCTGTTTACTTACTATATTTTTATCATCCTTACAATTC
CTTGTTCTACATATACCCACTAATTTTCTTCTTTATTTTTATTATAATTT
TTCAATCTCCCCTAATTCCTTCTCCTATACCTTTATCTCTTACTCTTTAT
TCTCCTATTTCTCTTATCATGTTTCTCCCTTTTATTTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_e09.b1 MSMg01no328_e09.b1 CHROMAT_FILE:
MSMg01no328_e09.b1 PHD_FILE: MSMg01no328_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:23 2005
         (282 letters)



>mm_chr2_120824203_120824884
          Length = 682

 Score =  536 bits (277), Expect = e-157
 Identities = 277/277 (100%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctgcaccctcttccctggagagcaaagtgggtgatgtgaggatgtgtgctaatcc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgcaccctcttccctggagagcaaagtgggtgatgtgaggatgtgtgctaatcc 265

                                                                       
Query: 66  tcagcacatagccggtccctccggcacctatccccctccttaatggcttcctaaagcttg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcagcacatagccggtccctccggcacctatccccctccttaatggcttcctaaagcttg 325

                                                                       
Query: 126 tcaccaatcacaggtgacattctctccactcaccacctcacagttgtttcaggaacttct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcaccaatcacaggtgacattctctccactcaccacctcacagttgtttcaggaacttct 385

                                                                       
Query: 186 gtctacagccaagcatttaaacaggaagtgatttactattttctattatcgtttataaaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtctacagccaagcatttaaacaggaagtgatttactattttctattatcgtttataaaa 445

                                                
Query: 246 ttataaaagtcttagtagttactggagaacagaggac 282
           |||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttataaaagtcttagtagttactggagaacagaggac 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no328_e09.g1 MSMg01no328_e09.g1 CHROMAT_FILE:
MSMg01no328_e09.g1 PHD_FILE: MSMg01no328_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:23 2005
         (250 letters)



>mm_chr2_120999179_120999828
          Length = 650

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattacataaaatctgtgtaagaacatgagtagagtttttgttgttacccaagaaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tcattacataaaatctgtgtaagaacatgagtagagtttttgttgttacccaagaaaagt 391

                                                                       
Query: 61  cagagatcttgccttcccttgagcatttccagtgattcataaactcaggagtattccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cagagatcttgccttcccttgagcatttccagtgattcataaactcaggagtattccaga 331

                                                                       
Query: 121 aatttctaacttgctttaccagtgaattcactgcctgatagcactcctgccctgtagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aatttctaacttgctttaccagtgaattcactgcctgatagcactcctgccctgtagaag 271

                                                                       
Query: 181 cccatatccagataacaggatctcacctgttgctgcacatggcctgtatactgttcaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cccatatccagataacaggatctcacctgttgctgcacatggcctgtatactgttcaatg 211

                     
Query: 241 aactcagtga 250
           ||||||||||
Sbjct: 210 aactcagtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)