Query= MSMg01no328_e24.b1 MSMg01no328_e24.b1 CHROMAT_FILE:
MSMg01no328_e24.b1 PHD_FILE: MSMg01no328_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:26 2005
(311 letters)
>mm_chr2_173348484_173349194
Length = 711
Score = 472 bits (244), Expect = e-137
Identities = 294/320 (91%), Gaps = 20/320 (6%)
Strand = Plus / Plus
Query: 1 ctacacagtaagacctgtctcaaacagcaacagcagcagcagcaacaacaacaacaaatc 60
||||||||||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct: 207 ctacacagtaagacctgtctcaaacag---cagcagcaggag---caacaacaacaaatc 260
Query: 61 tattccctgaaagacttgtctccatcaggcatctgtaatggatatttttgagtgctaaat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattccctgaaagacttgtctccatcaggcatctgtaatggatatttttgagtgctaaat 320
Query: 121 agtattccattatttggcattttaaccactataggaagtctaatttaaaccttagatgca 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 agtattccattatttggcattttaaccactatagaaagtctaatttaaaccttagatgca 380
Query: 181 agagaaatctgtccctctctctcctccattccctccctccctccctccctcc------ct 234
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 agagaaatctgtccctctctctcctccattccctccctccctccctccctccttctccct 440
Query: 235 ccctccctctctccttc--tc--tccttctctccctccctcccttcctccctccctcctt 290
|||||||||||||| || || ||||||||||| || |||||| ||||||||||||
Sbjct: 441 ccctccctctctccctccctccctccttctctccttctctccct----ccctccctcctt 496
Query: 291 ctctccctccctccctccct 310
||||||||||||||||||||
Sbjct: 497 ctctccctccctccctccct 516
Score = 62.6 bits (32), Expect = 3e-14
Identities = 52/60 (86%), Gaps = 4/60 (6%)
Strand = Plus / Plus
Query: 192 tccctctctctcctccat---tccctccctccctccctccctccctccctccctctctcc 248
|||||| ||| ||||| | ||||||||||||||||||||||||||| |||||| ||||
Sbjct: 588 tccctccctc-cctccctctctccctccctccctccctccctccctccatccctccctcc 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 110
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_e24.g1 MSMg01no328_e24.g1 CHROMAT_FILE:
MSMg01no328_e24.g1 PHD_FILE: MSMg01no328_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:26 2005
(556 letters)
>mm_chr2_173524214_173525169
Length = 956
Score = 874 bits (452), Expect = 0.0
Identities = 461/464 (99%)
Strand = Plus / Minus
Query: 1 agtttaggttaagcagccagttcattggaggactgattcagaaatcaaagtcaaaccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agtttaggttaagcagccagttcattggaggactgattcagaaatcaaagtcaaaccaaa 405
Query: 61 aggaaggcatttccaacatagtcaaccagggctgacatccagagttaaggcatgagtcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aggaaggcatttccaacatagtcaaccagggctgacatccagagttaaggcatgagtcat 345
Query: 121 caggaaggcaggtgctgactcggtagaaggcaggcaagagggtaagaatgctggagagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 caggaaggcaggtgctgactcggtagaaggcaggcaagagggtaagaatgctggagagaa 285
Query: 181 gggtgccagctatcgttcaggtgctcagcttcaaggcagacatgggaatgcaggtcctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gggtgccagctatcgttcaggtgctcagcttcaaggcagacatgggaatgcaggtcctgc 225
Query: 241 tctcctacagactgacagaagagatttcatacaccacttctgtgggaagcagctggcaca 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 224 tctcctacagactgacagaagagatctcatacaccacttctgtgggaagcagctggcaca 165
Query: 301 actacgactctacaaactgtttggcagtaaagtcacaacgaagacatgcccatctaagga 360
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 164 actacgactctacaaactgtttggcagtaaagtcacaacgaagacatgcaaatctaagga 105
Query: 361 cccagcaatctttctcttgggtgcagagatgccaagcaaatgcatccagatgttccccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 cccagcaatctttctcttgggtgcagagatgccaagcaaatgcatccagatgttccccag 45
Query: 421 aggacacagggtgttcaacagtgcagccggcaattaccctaaat 464
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 aggacacagggtgttcaacagtgcagccggcaattaccctaaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
