BAC Information

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BAC

Clone NameMSMg01-328F01
Chromosome2 (Build37)
Map Location 81,367,854 - 81,368,282
singlet/doubletsinglet
Overlap genenone
Upstream geneNckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328F01.T7 (MSMg01no328_f01.b1)MSMg01-328F01.TJ (MSMg01no328_f01.g1)
ACCAG445443AG445444
length715715
length of high quality
(start - end)
433 (48 - 480)632 (79 - 710)
definitionCHROMAT_FILE: MSMg01no328_f01.b1 PHD_FILE: MSMg01no328_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:26 2005CHROMAT_FILE: MSMg01no328_f01.g1 PHD_FILE: MSMg01no328_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGACAATCTCCATCACAAAACAGAAACATGAGGATCAATAGT
TTGAGGTCATCTTTCCTTAACAGTGAGTTCCAGCCTAGTTTGGCATACGT
GAACCCCTGTCTCAAAAGAGAAACAACAAATGAAGAGGCAAAAGCAATTG
ATTATAAAAGGCATAAAAGAATACTGATCTTGAAGTAAGAAAGATACCAG
AACATCATGAAGTTTACCCAGGTTATGAATGTAAAATATTCTCTAGGCTA
TGGTGATTGAATGATACATAAGTGAAAACCATGAGAATTTCTGAATTGAA
AGTAGGGAACTGAATTTGGGGAGAAAGTAAGTCAAGTCACAGGACAGAGA
GCATCGGGGAGGAAAGATCTGCTTCGATATATGTTATTGGTCCTGATTAA
TTCATTTGTTGGAAATCTATGTGACCTTGGGAAGGGNACTTAAAAGAGAC
TGGAGACAGCATCACTCAGCACCCCCTCAGTATGCCTTCCTACTAGCCAT
ACTACAAAAGAAGTGTCTCAGATATTTGCATACAGTACCCAAAAATATCA
TTTTGACACTCAGGGGTACTTAGCCCTGGATGAGCTCCGCCTCCCTCCTA
CCTAGGACATACAGAGACCTACCACTCAAGAACAAGCTTTGCCAATTGAG
TTGTTCATGATTCAC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTCAGGAATACCGAATGG
TAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACTCTGAGATTCAACCTCAAACCAGTCAGAATGGCTAA
GATGAAAAATTCAGTTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTCA
AAATCAGTCTGGCGGTTCCTCAGAAAATTTGACATAGTACTACCAGAGGA
TCCAGCAACACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCAGTA
AGAAGGATACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
ACAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTAAGGTAACCCAATTACAAAGGAATTCACACAATATGTACCCACTGAT
AAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAAT
TTGCTAATCGCATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_f01.b1 MSMg01no328_f01.b1 CHROMAT_FILE:
MSMg01no328_f01.b1 PHD_FILE: MSMg01no328_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:26 2005
         (433 letters)



>mm_chr2_81367650_81368482
          Length = 833

 Score =  799 bits (413), Expect = 0.0
 Identities = 425/429 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagacaatctccatcacaaaacagaaacatgaggatcaatagtttgaggtcatc 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagacaatctgaatcacaaaacagaaacatgaggatcaatagtttgaggtcatc 264

                                                                       
Query: 65  tttccttaacagtgagttccagcctagtttggcatacgtgaacccctgtctcaaaagaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttccttaacagtgagttccagcctagtttggcatacgtgaacccctgtctcaaaagaga 324

                                                                       
Query: 125 aacaacaaatgaagaggcaaaagcaattgattataaaaggcataaaagaatactgatctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacaacaaatgaagaggcaaaagcaattgattataaaaggcataaaagaatactgatctt 384

                                                                       
Query: 185 gaagtaagaaagataccagaacatcatgaagtttacccaggttatgaatgtaaaatattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaagtaagaaagataccagaacatcatgaagtttacccaggttatgaatgtaaaatattc 444

                                                                       
Query: 245 tctaggctatggtgattgaatgatacataagtgaaaaccatgagaatttctgaattgaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctaggctatggtgattgaatgatacataagtgaaaaccatgagaatttctgaattgaaa 504

                                                                       
Query: 305 gtagggaactgaatttggggagaaagtaagtcaagtcacaggacagagagcatcggggag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtagggaactgaatttggggagaaagtaagtcaagtcacaggacagagagcatcggggag 564

                                                                       
Query: 365 gaaagatctgcttcgatatatgttattggtcctgattaattcatttgttggaaatctatg 424
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaagatctgctttgatatatgttattggtcctgattaattcatttgttggaaatctatg 624

                    
Query: 425 tgaccttgg 433
           |||||||||
Sbjct: 625 tgaccttgg 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)