BAC Information

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BAC

Clone NameMSMg01-328M13
Chromosome2 (Build37)
Map Location 7,912,091 - 7,912,337
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040648
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328M13.T7 (MSMg01no328_m13.b1)MSMg01-328M13.TJ (MSMg01no328_m13.g1)
ACCAG445791AG445792
length764766
length of high quality
(start - end)
349 (70 - 418)246 (72 - 317)
definitionCHROMAT_FILE: MSMg01no328_m13.b1 PHD_FILE: MSMg01no328_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:02 2005CHROMAT_FILE: MSMg01no328_m13.g1 PHD_FILE: MSMg01no328_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAAGCACATGACGAATTTTAGTCTTCAGAATGATACTTACGAGAAGA
GTCAGAATCTGTGTTCATCTGACGAATTAATCTCTCTGGCAGCCACCGCA
CTCCATCTTCATCTCGTGAAAAAAAAAACAAAAAAACAAAAAACCGAGCC
CCTTCCCCAAATTAGAACAAGATCTGGATCCTTCCATTCATTAGTCAGGG
GGTCCTTCCACTTTACCAATGCATAAGAATTAGAAGTAACTGGATGCCAA
TGGCGATCCGCTGCAGACTGATCTTTAATATCAGTTTGCAAAAAATTTAG
AACAAATAAGGTAAAGGCAAGGTGGGCCTTTGGTGACCTTGGGGGGAAAT
AGCTGTCCCTCTTTTGCCCCACAAAGCCAATTCTTTAAGGTGCGATGAGC
ACGTTCAACTATTCCTTGCCTCATGGGGTTGTAAGGAATTCCAGTTTTAT
GTTTGATACCGAATTCCTTACAGAATGAAATAAAGTTTTTACTAGAATAA
GATGGCCCGTTATCTGTCTTAATAAGTTTAGGCAATCCCATGGCATTAAA
GTCTTGTAGACAATGATCAATTACATTTTTGAAGCCTCTCCTGTATGCAT
ATAAGCAAAAAGAAATCCTGAACTGGTATCGATGCAAACATGAATAAATT
TTAGTTTTCCAATTTCTTGCATAAGGGGTTATATCCATTTTGCCAAATAT
GATTACACTTATTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCCGAAATAAAACATAACATCCATCTACAGGGTCATAGG
TTCAAACATGAAATTTGCTCAACAGCAGAAGTACTCCGTACTCAATAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATACAATCTAGG
AAACAAAGTTATTCATAAGCCAATGAAACAGATCCAAAGCAGCTGTGCCA
TACTTGATGCCTTCTCACCACTTCCTTCTGAACACACAAGGATGAATCAT
TTAGTAAGAGAGTAGTATGNATACTTTCTTAAAAAGCCCTTTTGCTTATC
TATAAAAGAAAATTTTTGTGACCACATTGTTTTGTTTAGAAAATCTGATT
ATCTTTCTGCTCTCCCACCCCGACTTGTTTCCACCCATAAGTTATTTAGA
TGATACACAATTTAGGGTGATTGAAAAAATAAAGCACAAGTTTATAGGGA
AAAAAGAATAAATATTCCAATATTTAATGTGAATCTAATACAAACGAACA
TAGTTCTAAAGCCTCTTTGTGCGCGTTAACATATTTTATAGAACACAGAT
AACTTCAAGAATTTAAAACGTTACTATTAGATGTCGGGAAGTATGAGCTT
GGTTTGATGTTTTTTTATTTGTGTGAGATTTTTAATCAGACTGTATTTTC
TGCACGGTCAATATTGTGGTCGCTTATTTTCTATTTTTTGTTTTTCACTC
ATCTAACTTTATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_m13.g1 MSMg01no328_m13.g1 CHROMAT_FILE:
MSMg01no328_m13.g1 PHD_FILE: MSMg01no328_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:02 2005
         (246 letters)



>mm_chr2_7911891_7912537
          Length = 647

 Score =  439 bits (227), Expect = e-128
 Identities = 242/247 (97%), Gaps = 1/247 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacataacatccatctacagggtcataggttcaaacatgaaatttgctcaacagcagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacataacatccatctacagggtcataggttcaaacatgaaatttgctcaacagcagaag 260

                                                                       
Query: 61  tactccgtactcaataaataaataaataaataaataaataaataaataaataaataaata 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattccgtactcaataaataaataaataaataaataaataaataaataaataaataaata 320

                                                                       
Query: 121 caatctaggaaacaaagttattcataagccaatgaaacagatccaaagcagct-gtgcca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 caatctaggaaacaaagttattcataagccaatgaaacagatccaaagcagcttgtgcca 380

                                                                       
Query: 180 tacttgatgccttctcaccacttccttctgaacacacaaggatgaatcatttagtaagag 239
           ||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tacctgatgccttctcaccatttccttctgaacacacaaggatgaatcatttggtaagag 440

                  
Query: 240 agtagta 246
           |||||||
Sbjct: 441 agtagta 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 647
Length adjustment: 9
Effective length of query: 237
Effective length of database: 638
Effective search space:   151206
Effective search space used:   151206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)