BAC Information

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BAC

Clone NameMSMg01-329B02
Chromosome2 (Build37)
Map Location 121,186,611 - 121,186,908
singlet/doubletsinglet
Overlap geneCkmt1
Upstream geneTmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a
Downstream geneStrc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329B02.T7 (MSMg01no329_b02.b1)MSMg01-329B02.TJ (MSMg01no329_b02.g1)
ACCAG445999AG446000
length766770
length of high quality
(start - end)
287 (48 - 334)298 (78 - 375)
definitionCHROMAT_FILE: MSMg01no329_b02.b1 PHD_FILE: MSMg01no329_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:23 2005CHROMAT_FILE: MSMg01no329_b02.g1 PHD_FILE: MSMg01no329_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTAAGTAGACCAGACTGCCCAAGTGATAGGAATAAAGTCCTG
TGACACCACACTAAATTCTTAGATTTTTTTTTTTAACCTTTGTGTTAATC
TTATGTGTTATGAGTGTTCTGCTTGCATACCATGTGTATGCAATACCTGC
AGAGATCAGAAGGCGGCACTGCATCCCTGAGAACTGGAGTTGCACTGGGT
TCTGAGCCACCATGCTGGGTATACAATTTGGATCATTTGAAAAAGTAACT
AGCGCTCTTCACGGCTGAGCCTCTAGATTTTTAATTACAAAGATTACCCA
CAGACATTATTTAATGAACATCCACATCACTTTATTTCTCTGATATATAA
TTAATTATTCCTTTTTACAATCCACACATACTGCTTAAGCTATTTACTTA
TACTTCCTCTTCTTCCCATTTTTCCCTTATATCCCATCGGTTCCATGTTC
CTACTTTGCTTATCCACCCTTTTCTTGATCTCCCTCTAACATCTTTTACT
ATTTTTCCTTCCTTCCTTTTTTTTGACTCCCACTTATTTTTTTTTATTTT
TACCTTTTTCCCTCCTTCCTTGCCTTACCTCCCCGTTTTTCCCCTTCTCC
CCCTTTCCCCGCTTTTTTTTTTTTTTTCCCCCCCTCCCCTTTTTCCTTGC
CTTTCTTTCAGTCCTTCTTTCCTTTCCCTTTTCCAATACCAGTTACCGTA
AATTACCTTCAGATCT
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGACCCAATCCCTTTATTCTC
CTCAGGACCATTTTCTGTTTGATAAACCTGTGTCCCCATTGCTGACTGCA
GCAGGAATGGCTCGAGACTGGCCTGATGCTCGAGGGATCTGGTATGGAGC
CAACACACTTTTTTGGTTTTTTTTTCCCCCTTGTATGTGCAAAGTTTTTT
CTCCATCTACCCCAGTGCTTGTCTTGCCCACTGATGGCTATACCTATCCT
GCCCTCAGGCACAACAATGAGAAGAGTTTCTTGATCTGGGTGAATGAGGA
GGACCACACACGGGTCATCTCTATGCAGAAAGGCGGCAACATGAATAGAG
TGTTTGATAGATTCTGTCGGCCCCTCTTTTAGGTTGCAGAAGGTTATATT
ATGCGAGCTAGGCTAGAGTAAGTGACAAACAGCTTTTCGCCTTTTACCCT
TGACCGGACCACATCTCCGGACCGTTTTTTCCATACCACTTTCTTGTCAT
TTTTAACGTCTTTCTTCTCTTTGCTGTTACGCCATTTTTTTTTTTAGCCT
CCTTCTTTTTTTGCCGTTTTCACTTAAGACTTTAGTCTCCTTTTCTTTTC
GCCCCGTTTTTCTTTTTGTTTTCCCTATTTACGTACTTTTAGCCTTCTTT
GTTCCCTGTTCTCCCTTTCTTCTCTCTCCTTCCTTCTCTCCTTCTTTTCC
TTTTCCATTAGTCTCCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_b02.g1 MSMg01no329_b02.g1 CHROMAT_FILE:
MSMg01no329_b02.g1 PHD_FILE: MSMg01no329_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:24 2005
         (298 letters)



>mm_chr2_121186411_121187108
          Length = 698

 Score =  576 bits (298), Expect = e-169
 Identities = 298/298 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagacccaatccctttattctcctcaggaccattttctgtttgataaacctgtgtcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagacccaatccctttattctcctcaggaccattttctgtttgataaacctgtgtcccc 260

                                                                       
Query: 61  attgctgactgcagcaggaatggctcgagactggcctgatgctcgagggatctggtatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgctgactgcagcaggaatggctcgagactggcctgatgctcgagggatctggtatgg 320

                                                                       
Query: 121 agccaacacacttttttggtttttttttcccccttgtatgtgcaaagttttttctccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccaacacacttttttggtttttttttcccccttgtatgtgcaaagttttttctccatc 380

                                                                       
Query: 181 taccccagtgcttgtcttgcccactgatggctatacctatcctgccctcaggcacaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccccagtgcttgtcttgcccactgatggctatacctatcctgccctcaggcacaacaa 440

                                                                     
Query: 241 tgagaagagtttcttgatctgggtgaatgaggaggaccacacacgggtcatctctatg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagaagagtttcttgatctgggtgaatgaggaggaccacacacgggtcatctctatg 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)