BAC Information

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BAC

Clone NameMSMg01-329C01
Chromosome2 (Build37)
Map Location 31,685,021 - 31,871,031
singlet/doubletdoublet
Overlap geneFibcd1, Lamc3, 2810003C17Rik, Nup214
Upstream genePrrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274
Downstream geneA130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329C01.T7 (MSMg01no329_c01.b1)MSMg01-329C01.TJ (MSMg01no329_c01.g1)
ACCAG446043AG446044
length735741
length of high quality
(start - end)		506 (46 - 551)430 (74 - 503)
definitionCHROMAT_FILE: MSMg01no329_c01.b1 PHD_FILE: MSMg01no329_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:28 2005CHROMAT_FILE: MSMg01no329_c01.g1 PHD_FILE: MSMg01no329_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,870,643 - 31,871,031)(31,685,021 - 31,685,450)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCG
GAATTCAAACCCTGTGCATCTAACTTTGTAGACCTTTTTCTCAATGCTTC
TATAAGAGGGTCCTATGCCAACAGGATTTCCACTGTAGGGATGGATGGAC
AGACGTAGGGTTACATACACACAGCAAGAGGAGGTGACAAAAGGCACCCT
AGAGGTATAAGTAATGTCACAAATCTGCTAACTGTTTTTTAAAGATTTAT
TTATTATTATACGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGA
GGGAATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGG
GATTTGAACTCAGGACCTCTGGAAAAGCTGTCAGTGCTCTTACCCGCTGA
GCCATCTCGTCAGCCCACAAATCTGCTAACTTAAAAACAGAGAGCTTATC
CTACAGGACAAATCCCATGAACTCTTTTTTTCTTTTCTTTTTCTTTATGA
GACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTTTAGA
CCAGGCTGGTCTCGAACTCAGAAATCCCCCTGCCTCTGCCTCCTGAGTGC
TTGGATTTAAGGTGTGCTCCACCACCACCCAAGTAATCCCTCTCTTAAAG
GCACCGGATTAAAGCAAAGGGGGAAGGCTGAAAAGAAAGCATAAATTCCT
GGGAGACAAGATCCTCTATAACAGGATTTCCTCTG

AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTTGGGCCCCAGAAGGTACCCAACTC
CATGGGCCTACCACTCACATGTACCACTGTCTCCTGACTCAGACCCTCTT
ACAACAGATGGGTCAGCAATACAAAATAGCCTTTGTCCAGAGCAAGCCTG
GCCACTCCCCGAACTGAGCCCTCTCTGTCCACCATCACCAGATCGCTAGA
CTAAGATCAGGGCCTCTCCAGTGACCCTCAACCTTGACACAAGCCAGCTC
CCTTGTCCTTCTGCCCTCTCAGCTGAGAGCTTAAAACTCTGCCTCAGTCC
CAAATGGCTCCCTGTGGCTGATGCTCTAGCAATTAATTGTTCAGTAGCAA
TTAATTGCATTGACTTGCCTCAGAAGGCCTGGACGTCCCCTGGCCAGGCT
GGCTGGGTAGCAGAGGCAAACCTCTTGCCCTCTCTAGGCTACCCTGCCAG
CCTTTGGGAATAGAAGGGGCATGGGGCAATGCCAGGCAGGTAAGTGTTAT
TCTTACTGCCAAGAGCCTCTGGGGCTGAGACTCTTCCTGCCCACTCTGGT
CTCTAAAAGGCACATTGTGTTGGTTCAAACCGCCCCAGGCCCTTGAAGCC
TCTCACATCATACAGTCCCTCTGGCGCACATCTTGTCTGTGTCGCATGTT
TCCTACCGTCTTGACACGTGCTGTTATGCTCTTCTGTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_c01.b1 MSMg01no329_c01.b1 CHROMAT_FILE:
MSMg01no329_c01.b1 PHD_FILE: MSMg01no329_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:28 2005
         (506 letters)



>mm_chr2_31870643_31871548
          Length = 906

 Score =  745 bits (385), Expect = 0.0
 Identities = 388/389 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcaaaccctgtgcatctaactttgtagacctttttctcaatgcttctataagaggg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaattcaaaccctgtgcatctaactttgtagacctttttctcaatgcttctataagaggg 330

                                                                       
Query: 66  tcctatgccaacaggatttccactgtagggatggatggacagacgtagggttacatacac 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcctatgccaacaggatttccactgtagggatggatggacagacgtagggttacatacac 270

                                                                       
Query: 126 acagcaagaggaggtgacaaaaggcaccctagaggtataagtaatgtcacaaatctgcta 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acagcaagaggaggtgacaaaaggcaccctagaggtataagtaatgtcacaaatctgcta 210

                                                                       
Query: 186 actgttttttaaagatttatttattattatacgtaagtacactgtagctgtcttcagaca 245
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 209 actgttttttaaagatttatttattattatacataagtacactgtagctgtcttcagaca 150

                                                                       
Query: 246 caccagaagagggaatcagatctcattacagatggttgtgagccaccatgtggttgctgg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 caccagaagagggaatcagatctcattacagatggttgtgagccaccatgtggttgctgg 90

                                                                       
Query: 306 gatttgaactcaggacctctggaaaagctgtcagtgctcttacccgctgagccatctcgt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  gatttgaactcaggacctctggaaaagctgtcagtgctcttacccgctgagccatctcgt 30

                                        
Query: 366 cagcccacaaatctgctaacttaaaaaca 394
           |||||||||||||||||||||||||||||
Sbjct: 29  cagcccacaaatctgctaacttaaaaaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no329_c01.g1 MSMg01no329_c01.g1 CHROMAT_FILE:
MSMg01no329_c01.g1 PHD_FILE: MSMg01no329_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:28 2005
         (430 letters)



>mm_chr2_31684821_31685650
          Length = 830

 Score =  801 bits (414), Expect = 0.0
 Identities = 426/430 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgggccccagaaggtacccaactccatgggcctaccactcacatgtaccactgtctc 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgggccccagaaggtacccaaccccatgggcctaccactcacatgtaccactgtctc 260

                                                                       
Query: 61  ctgactcagaccctcttacaacagatgggtcagcaatacaaaatagcctttgtccagagc 120
           |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 261 ctgactcagaccctcttacaacagatgggtcagcaatacaaagtagccttcgtccagagc 320

                                                                       
Query: 121 aagcctggccactccccgaactgagccctctctgtccaccatcaccagatcgctagacta 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcctggccactccgcgaactgagccctctctgtccaccatcaccagatcgctagacta 380

                                                                       
Query: 181 agatcagggcctctccagtgaccctcaaccttgacacaagccagctcccttgtccttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatcagggcctctccagtgaccctcaaccttgacacaagccagctcccttgtccttctg 440

                                                                       
Query: 241 ccctctcagctgagagcttaaaactctgcctcagtcccaaatggctccctgtggctgatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctctcagctgagagcttaaaactctgcctcagtcccaaatggctccctgtggctgatg 500

                                                                       
Query: 301 ctctagcaattaattgttcagtagcaattaattgcattgacttgcctcagaaggcctgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctagcaattaattgttcagtagcaattaattgcattgacttgcctcagaaggcctgga 560

                                                                       
Query: 361 cgtcccctggccaggctggctgggtagcagaggcaaacctcttgccctctctaggctacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgtcccctggccaggctggctgggtagcagaggcaaacctcttgccctctctaggctacc 620

                     
Query: 421 ctgccagcct 430
           ||||||||||
Sbjct: 621 ctgccagcct 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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