BAC Information

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BAC

Clone NameMSMg01-329G08
Chromosome2 (Build37)
Map Location 25,830,820 - 26,012,114
singlet/doubletdoublet
Overlap geneCamsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik
Upstream genePnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1
Downstream geneLhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329G08.T7 (MSMg01no329_g08.b1)MSMg01-329G08.TJ (MSMg01no329_g08.g1)
ACCAG446242AG446243
length746763
length of high quality
(start - end)
327 (20 - 346)248 (77 - 324)
definitionCHROMAT_FILE: MSMg01no329_g08.b1 PHD_FILE: MSMg01no329_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:50 2005CHROMAT_FILE: MSMg01no329_g08.g1 PHD_FILE: MSMg01no329_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,830,820 - 25,831,139)(26,011,871 - 26,012,114)
sequence
CTCCTACTTCAGAGAGAATCCGCGGAATTCTCATACTGTCCTCATGGGAA
ATAATGACTCAGCAACTTTGAAAAACTTCATACTTCCTTCTGAATTAAAA
TGCATTAACTCGTGACCCCCTAATCCTATACATAGTTAAGATTTTTTTTA
ATCTGCCCACATGAATGCACATAGCAGTTTTTTTCATAATACCCCAAAGC
TAGAAACGACCCCAACAACATTCCTCAACAGACAAATGGGCTAACCAAAC
AATGAGATAATATTACTAAGCAAAGACTGTACACATGACTGAATCTGATA
TATAATATGTGGAATGAAGGAAGCTAGGTGCAGGACCTTGATGCGCTCTA
CATGATAGGAAACTTCAGAGAGGAAGTATGTATAAGAAGCCCCCCACGAT
ACTTATAGGTGTCTGGATGTGTACCACCTAAACTTTACCTAGCTATATAC
TTATTTTTGTTTTACCGAGTACCTAAACTGTTTCTCCTTACACGTCTCCC
TCCAATGATTTTTATTATACCGTGCCCCGACAAATATTTTTATACCCTAC
TCCTGGAATATCTTGTCCCCTTGTCCTTTACCTTTTTCCCCCTTTTTTCT
CTTTACTCCTCCCTTTTCCCCTTCCCTTCACCCTCTCTCCCCTTTCTTTA
TTTTCCCGTTTCCCCCCTTTCTTTTCCCCTTTTCCCTTTTCCAACCTATC
CCTGTTCCTCTCAATCTCTCTCCATCCTTTTCCTTCTCATACTTTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAAATAATGCCAAAGTGCTGATA
TCAACAATCAGCAGACCCTGCTCTAAGGCTAGTCCCTTACCCTGGTCTCT
GTGCACCCACATCTGGGGGCAGGTCATGAACTTGTGTCATGCCACAAGTG
TCATTTCAGGGTGAAGGTTTCCTGAAGCCTGCCATGCAATGGTCTGAAGC
TGTCAAGTACGAGATTTTGCTTAGCTGCTGCCCCCTGTAGGGACCAGATC
TGGAGATAAAAGGCCATTGATAATATTAAGGGTGGATAACAGTGAGACTT
CCCTCCCAGACGTCTTACTTCCCAGCTGCTCATACAGCTAGGTGCTCATC
CCCCTGTCCTGTCATGAACCCCTTATAATTCACATGGAAGTATCCATTCA
TTCAGGAGATCAACTGTTCACTTGGCCCACGCCACTCACTCACCTCGTAT
GCTCGCATCCTGTGTTCCCCGCCCTTTCTCCCTTTACCATTTTCCTCTTT
TTTCTCTTCTCCTCTTCTCCTTTCCATTCATTTTCCCTCTTTCTCCCCCC
TTTCTTCCTTATTTTTTTTCCTCCCACCTTTTCATACCCTTTTTTCCGCC
TTTTTAACCCTTTTTACCACCTTTTTCTTTCCCTTTCCCTTCTTTTACCT
CTTTTCAACCCCCTTCCTTTCCCCCCCTCCCTTCATCTCTTTTTTCTCCT
TCCTTCATACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_g08.b1 MSMg01no329_g08.b1 CHROMAT_FILE:
MSMg01no329_g08.b1 PHD_FILE: MSMg01no329_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:50 2005
         (327 letters)



>mm_chr2_25830616_25831342
          Length = 727

 Score =  565 bits (292), Expect = e-165
 Identities = 313/320 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctcatactgtcctcatgggaaataatgactcagcaactttgaaaaacttcatac 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctcatacagtgctcatgggaaataatgactcagcaactttgaaaaacttcatac 264

                                                                       
Query: 65  ttccttctgaattaaaatgcattaactcgtgaccccctaatcctatacatagttaagatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttccttctgaattaaaatgcattaactcgtgaccccctaatcctatacatagttaagatt 324

                                                                       
Query: 125 ttttttaatctgcccacatgaatgcacatagcagtttttttcataataccccaaagctag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttttaatctgcccacatgaatgcacatagcagtttttttcataataccccaaagctag 384

                                                                       
Query: 185 aaacgaccccaacaacattcctcaacagacaaatgggctaaccaaacaatgagataatat 244
           ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 aaatgaccccaacaacattcctcaacagacaaatgggctaaccatacaatgagataatat 444

                                                                       
Query: 245 tactaagcaaagactgtacacatgactgaatctgatatataatatgtggaatgaaggaag 304
           ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct: 445 tactaagcaaagactgtacacatgaatgaatctgaaagataatatgtggaatgaaggaag 504

                               
Query: 305 ctaggtgcaggaccttgatg 324
           ||||||||||||||||||||
Sbjct: 505 ctaggtgcaggaccttgatg 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no329_g08.g1 MSMg01no329_g08.g1 CHROMAT_FILE:
MSMg01no329_g08.g1 PHD_FILE: MSMg01no329_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:50 2005
         (248 letters)



>mm_chr2_26011671_26012318
          Length = 648

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaataatgccaaagtgctgatatcaacaatcagcagaccctgctctaaggctagtccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataaataatgccaaagtgctgatatcaacaatcagcagaccctgctctaaggctagtccc 385

                                                                       
Query: 61  ttaccctggtctctgtgcacccacatctgggggcaggtcatgaacttgtgtcatgccaca 120
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 ttaccccggtctctgtgcacccacatctgggggcaggtcacgaacttgtgtcatgccaca 325

                                                                       
Query: 121 agtgtcatttcagggtgaaggtttcctgaagcctgccatgcaatggtctgaagctgtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtgtcatttcagggtgaaggtttcctgaagcctgccatgcaatggtctgaagctgtcaa 265

                                                                       
Query: 181 gtacgagattttgcttagctgctgccccctgtagggaccagatctggagataaaaggcca 240
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 264 gtaggagattttgcttagctgctgccccctgtagggaccagatctggagataaatggcca 205

               
Query: 241 ttga 244
           ||||
Sbjct: 204 ttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)