BAC Information

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BAC

Clone NameMSMg01-330E01
Chromosome2 (Build37)
Map Location 41,766,399 - 41,766,637
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330E01.T7 (MSMg01no330_e01.b1)MSMg01-330E01.TJ (MSMg01no330_e01.g1)
ACCAG446859AG446860
length751755
length of high quality
(start - end)
239 (128 - 366)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no330_e01.b1 PHD_FILE: MSMg01no330_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:56 2005CHROMAT_FILE: MSMg01no330_e01.g1 PHD_FILE: MSMg01no330_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTTAAATGGTTCATGTAACAATCACTTGATTCTAGTCTACAGAT
TTCAAATACAATACTTTTGTACAACCGGATTCTCTGGTAAGATGCCTCGG
CTAGGTTGATTTTAAATGTCCACAGCAAATATAAGTAGATAAAAAAGTAA
TATTTACTCATACGTTCATTTATGAATCACCACTGAGAAATGGAATATAC
ATGATAATTGAATCTACTCATGGATTCTAAGCAAATAATTTATTATAATA
TTGACATAATTTCACCTACTTTGTGCTATTGTAATATACTGAAAATAGAC
TGTTAAAATTGTATTATATGTATCTGATAACTCATGTCTTTATATCTATC
CATCCAATTTATTTAACTACTCATGAATTTAAAAGTTTGCCAACTAATTT
TTATTGTTTAGTTGTGCAGTTTCTTACCAGGAAATACAGTAAATCCTCCC
ACATTCTGACCATAAATGCTTAATAGACATTATATATAAATATATTATAT
AGATATGATATAGTTATATATGTATATAAAACCCTACCTTCCCATTAGCA
TTTTAACTTCAACTATCAGCTTCTCAATGCAGTGATTATGTAATCAGCCT
CTGAATGACTTAATTACTTANTTACAATTATATGATGATCCCATTGCCTT
AGGAAATGAATCCAGGTATTCAGATCTTGGGCCTGATCTCATATTATTTC
C
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCAGTAGCTGTGATTCTGGGATTC
TGGGATCCTTTGATCTTCTGATCCCGGGTGTGTCAGAGCTCCTGGGAGTC
AAGCTGCCTCTGGGATCCTGAAATCCTTATGTGACCAAGCTCCTGAGACC
CTGTGCTTCAGAGCTTCTGTGATTCAAGCTTTCTCTGGGTGTGGCAGGGG
TCAGTGGGTAGAGACTCAGCTTTGGGTTTGCTCCAGGCATGGGTGAAAGC
TGGAAGGAACCAGTGCCTTTGGTTGGCTTTGTGTTTCACTGGTTCCTTTG
GGGGTCCCAGTTACTTTGTTTTGTTACGCACACACGTTGTGGTCTCAGCT
GTGATCTTGAGTATGTCAGAAATCTAGTGCTCCTGGATGTGTGAGACCTC
CTGGGAGTCCAGCTCCCGCTGTAATCGTGTGATCAGGGGCATTTCAGAGC
ACCTGGGAGTTGGGCTTCCTCTGCATGTTGTAAGAATAGGTACAGATCCA
GCATCCAACCTCTATTCAGAGTACAGATTCAGACTTGAAGGAAACTATGC
CACTGGCTGTGTGGGTGTTCCTTTGTTCCTGGATCCTGGAGTACCCAAGT
ACTCCAGACGTTGGGGCAGATGCTGTGGCCTCTTCTGTGATCCTGGGCCA
TTCAGAGCACATGAGAGTCTAACTTTCTCTGGGTGTTATGGGACTGACTG
TGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_e01.b1 MSMg01no330_e01.b1 CHROMAT_FILE:
MSMg01no330_e01.b1 PHD_FILE: MSMg01no330_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:56 2005
         (239 letters)



>mm_chr2_41766199_41766837
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattctctggtaagatgcctcggctaggttgattttaaatgtccacagcaaatataagta 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gattctctggtaagatgcctaggctaggttgattttaaatgtccacagcaaatataagta 380

                                                                       
Query: 61  gataaaaaagtaatatttactcatacgttcatttatgaatcaccactgagaaatggaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gataaaaaagtaatatttactcatacgttcatttatgaatcaccactgagaaatggaata 320

                                                                       
Query: 121 tacatgataattgaatctactcatggattctaagcaaataatttattataatattgacat 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 319 tacatgataattgaatctactcatggattccaagcaaataatttattataatattgacat 260

                                                                      
Query: 181 aatttcacctactttgtgctattgtaatatactgaaaatagactgttaaaattgtatta 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aatttcacctactttgtgctattgtaatatactgaaaatagactgttaaaattgtatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)