BAC Information

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BAC

Clone NameMSMg01-330L04
Chromosome2 (Build37)
Map Location 4,957,926 - 4,958,240
singlet/doubletsinglet
Overlap geneOptn
Upstream geneLOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10
Downstream geneCcdc3, LOC100040292, Camk1d, LOC666599, Cdc123, Nudt5, Sec61a2, Dhtkd1, Upf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330L04.T7 (MSMg01no330_l04.b1)MSMg01-330L04.TJ (MSMg01no330_l04.g1)
ACCAG447184AG447185
length7421,018
length of high quality
(start - end)
318 (45 - 362)---
definitionCHROMAT_FILE: MSMg01no330_l04.b1 PHD_FILE: MSMg01no330_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:28 2005CHROMAT_FILE: MSMg01no330_l04.g1 PHD_FILE: MSMg01no330_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCAGCTCGCCGCTGTTGGATCCCATTTCCTTAACCCAGTGCCTTT
CTTACTCTTTCCCCCTTAGTACCTACACTGTATCTCTACTGACTTACTGA
GGAAGAATATGAGAAGAGAATATTTTCTGAGATCTGCCTAGCCAAAAGTC
TCCCACCTCTTTGCTTCATCTGTATTCTGTATGTATTCATCTTATGTATT
CATCTGTATGTATTCATCACAGGAGTTCTAGTCAGCAATAGGATAAAAGC
AAGATGACTGCTAAAGAGGCAAATATAAAGAGACATTGAAGCCCTGCCTT
TCTCCAGGCTCTGATTTGTGCCTTCCCCCGCCTCTACAGCTGCTTGTCCT
CGTGTGTCTAAACAGAAAGTAAAACTTCTCTACATTCTGATGTTGTTGGT
GTTTTGTTTTGTTGTTTTCAGAATTTCAGATTTTGAAAAGAAAGCAAATG
GCCATTCTTCGACTGAGAAGCAGACAGCGAGGAGAGCAGACAGAGAGAAG
GAGGACAAAGGCCAAGAGAGTGTGGGTACAGCACCGCCAAAGGACTGGCA
CGTCCCTGGCATGTCCCTGTTGGTGACGTGGTTGCTGGGTTCAAGTCTTA
CGTTGCACTATTTACCTTAAAAATGGAAACTTGTTTGTTTCAGAATACTT
TTCTACTTCTTTCGTTTTCATTTCCTTATCCTGAAATTGAAG
CCCCAAAAATAATTGGGGGGGGGGGGGGGGCGGGGTGTTTTCCACAAAAA
GGGGGGAAAAAAAAAAAAGGTGGGCGGCCACCACCAACCGTGATTTTTTG
AAGTGAGGAGGGGGAGTTTGTGGTTACTTGGAGTTTTTTGCGCCCCCCCA
GGAAAAACAACATTCCTCTCAACAAAATAAAAAAAACATAGGTTTGGGGG
GGGGGGCGGGCTGTGCAAAAAAAAAAAATAAAAACTTGTGAAAGAGGGAG
AGAGAGGGAGAGAGTTTTTATTCTAAACCCCCTCGGTGGGGGGGGGGCTA
TCGTAAAGGGGGGGGGGGATGTACCGCCGGCTCCCTTCTATTTTTTTTTG
AGATGTCCTTTATGTTGTTTTTTGTTGGGGACCGCGGAAGGAAAAGGATT
TCCCCTCCATAATTTTTTTTTTTTTATGGAGATTCGGGAGAAGTTGGAGA
TACTTTTACAAAAAAGAAGATTTTTTTTTTTTTTTTTTTTTTTAAGGAGA
TGTCGCGCCCCCCCGCCCTCCCCCTTTCCTAAAAATATGTAAGTGATTGG
ATTTAACGGTTGGGGGGCAGGGGGTGTTTTTCTGTTTTCTGTGTTTAGAC
TGTGAAAAGAATAAAAAGTATAAATTATTCACAACTTCTATTTTTTGGTG
GGGTGAGGTGGGCGTTGTGGAAGCGCCACTAATGATTTTAGAATAAAGAG
TATTAAGGAATATGAAGTTCTGTTCAAATATACAATATTAATACGTTTGA
TAATGGTGGATACGGATAAGCTTGTTATCATACATATTCAGTAGTTTGGA
TATTCTGCTATGTTCGTTTACATTATGTCGTTTATCGTCAGAATATAAGA
GTTTTGTGCGTATCGTAATCTATTATATCAACATAATTAAATAATATNTT
GTAGCTTCAGTGGAATCACTGTTAGTAATGTGTAGGAGTCAGAGTCGTTA
GAGAGGCCACGGTCAGTGTTTACGATGCGATGTCGTGAGATGTGTGTTGA
GATGAGAGGGTGTGGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_l04.b1 MSMg01no330_l04.b1 CHROMAT_FILE:
MSMg01no330_l04.b1 PHD_FILE: MSMg01no330_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:28 2005
         (318 letters)



>mm_chr2_4957722_4958440
          Length = 719

 Score =  578 bits (299), Expect = e-169
 Identities = 311/315 (98%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcagctcgccgctgttggatcccatttccttaacccagtgcctttcttactct 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcctcagctcgccactgttggatcccatttccttaacccagtgcctttcttactct 460

                                                                       
Query: 65  ttcccccttagt-acctacactgtatctctactgacttactgaggaagaatatgagaaga 123
           |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttcccccttagtaaagtacactgtatctctactgacttactgaggaagaatatgagaaga 400

                                                                       
Query: 124 gaatattttctgagatctgcctagccaaaagtctcccacctctttgcttcatctgtattc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaatattttctgagatctgcctagccaaaagtctcccacctctttgcttcatctgtattc 340

                                                                       
Query: 184 tgtatgtattcatcttatgtattcatctgtatgtattcatcacaggagttctagtcagca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgtatgtattcatcttatgtattcatctgtatgtattcatcacaggagttctagtcagca 280

                                                                       
Query: 244 ataggataaaagcaagatgactgctaaagaggcaaatataaagagacattgaagccctgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ataggataaaagcaagatgactgctaaagaggcaaatataaagagacattgaagccctgc 220

                          
Query: 304 ctttctccaggctct 318
           |||||||||||||||
Sbjct: 219 ctttctccaggctct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space:   219390
Effective search space used:   219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)