BAC Information

Click to search

BAC

Clone NameMSMg01-330L12
Chromosome4 (Build37)2 (Build37)
Map Location 118,374,804 - 118,375,113173,810,040 - 173,810,221
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342
Downstream geneOlfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330L12.T7 (MSMg01no330_l12.b1)MSMg01-330L12.TJ (MSMg01no330_l12.g1)
ACCAG447199AG447200
length745730
length of high quality
(start - end)
316 (46 - 361)279 (83 - 361)
definitionCHROMAT_FILE: MSMg01no330_l12.b1 PHD_FILE: MSMg01no330_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:29 2005CHROMAT_FILE: MSMg01no330_l12.g1 PHD_FILE: MSMg01no330_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:29 2005
singlet/doubletsingletsinglet
BLAST hituniqueplural
Map location.(118,374,804 - 118,375,113)(173,810,040 - 173,810,221)
sequence
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGATATGAACCCACACTCATGGAGGAAATTAACAATAGCACAGG
GCAGAAGGACTAAAGCACTACCCCGCAGTTCCATTCAACAAGGAAAGGTC
CCATTGACAGTTACTGATGCTCTCTCTAGTTCTTCCCTCTGACTGAATGA
CAGTAGGTCTTCTCCATCCAGGCTGGTTGCACATTTCACATTCAGTAGTA
TTGTAACTGATTCTAGTTGTAAGATTGTCCATTAACCTTTGCTTTGCCAA
AAGTAACATGTGTTTGGTGACATTTGGGCTGGGGGCAGTTGACATATCAT
CAACAGTCCTTACCTGAGTACCCCTNCCGNTCCTCTCTTCCAGAGTCTCT
TGTAGGATGGCAGAAAATGGTACTTAAGAAAAAAAGAGACTTACTGGGGG
AATTCCACCTATGAACTTTAATGTTTTGACATTTATTTATTATTTATATA
ATTGTTTGTGTGTGTGCATGTTTATATGAATGTATGTGTGTGTGTGACAT
CATACATGTATAGGTCATAAGACAACTTTGCTAGAATTGATTTTCTCCTG
CCATCAGGGACCAGACTTCTGTCATCACTCTTGGTAGCAAGAGCTTTCAC
CTGATGGACCTCTGCTAATGAGTTTGAAGAGAAAAATTGGTTTCCTAATG
AAAGAGATTGGATAACTTGTGACCTCATTCCTATTCCTCAAGACC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGCATTCATCCAACAGG
TTAACCCAGTGCTAGGCCCGATGTGCCCACTTCTGGTGGAGAATACACAC
TCACTATTCTGCTCTTAAAAACCTTTTAAGAGCTTCCGGCGCGAAGGTCA
CGGACAAAATGGTGCCCCCGGTTCAGGTCTCTCCACTCATCAAGTTCGGC
CGGTACTCCGCTCTGATCATCGGCATGGCATACGGCGCCAAGCGCTACAG
TTACCTAAAACCCCGGGCAGAGGATGAGAGGAGAATAGCAGCGGAGGAAA
AGAAGAGACTAGATGATTTTAAACGCATTGAGAGAGAACTGGCGGAAGCT
CAAGATGACAGCATTCTCAAGTGAGGCGTCAGCGAGCTTGCTTTTCTCTA
GTCGTTGAGAACGAATAAAGCTTCATTGTGTGAAAAATAAAAAATAATCT
AAACACGAAAACCTTTTAAAAGGACCGTGCCAGCGAGGCAAGGTGACTCA
AACCTGCATTCCCAACTCTTGGTTGATGGAGGCAGAATATTCAAAAATTC
AAAGTCAGCCTTGGGCCACTGTGTGAATTTGAGGCCAACCTGCTTGAGAC
CCTGTTTCAAACAAACCAAAACCCTTAATAAACAAGAATCAAGAGGGCTA
AGGGTCTCATATTTAAAGCCAGGCTTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_l12.b1 MSMg01no330_l12.b1 CHROMAT_FILE:
MSMg01no330_l12.b1 PHD_FILE: MSMg01no330_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:29 2005
         (316 letters)



>mm_chr4_118374600_118375315
          Length = 716

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagatatgaacccacactcatggaggaaattaacaatagcacagggcagaagga 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattccagatatgaatccacactcatggaggaaattaacaatagcacagggcagaagga 455

                                                                       
Query: 65  ctaaagcactaccccgcagttccattcaacaaggaaaggtcccattgacagttactgatg 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctaaagcactaccctgcagttccattcaacaaggaaaggtcccattgacagttactgatg 395

                                                                       
Query: 125 ctctctctagttcttccctctgactgaatgacagtaggtcttctccatccaggctggttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctctctctagttcttccctctgactgaatgacagtaggtcttctccatccaggctggttg 335

                                                                       
Query: 185 cacatttcacattcagtagtattgtaactgattctagttgtaagattgtccattaacctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cacatttcacattcagtagtattgtaactgattctagttgtaagattgtccattaacctt 275

                                                                       
Query: 245 tgctttgccaaaagtaacatgtgtttggtgacatttgggctgggggcagttgacatatca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgctttgccaaaagtaacatgtgtttggtgacatttgggctgggggcagttgacatatca 215

                     
Query: 305 tcaacagtcc 314
           ||||||||||
Sbjct: 214 tcaacagtcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no330_l12.g1 MSMg01no330_l12.g1 CHROMAT_FILE:
MSMg01no330_l12.g1 PHD_FILE: MSMg01no330_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:29 2005
         (279 letters)



>mm_chr2_173809743_173810421
          Length = 679

 Score =  282 bits (146), Expect = 1e-80
 Identities = 173/182 (95%)
 Strand = Plus / Minus

                                                                       
Query: 98  gagcttccggcgcgaaggtcacggacaaaatggtgcccccggttcaggtctctccactca 157
           ||||||| |||| |||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 479 gagcttctggcgtgaaggtcaaggacaaaatggtgcccccagttcaggtctctccactca 420

                                                                       
Query: 158 tcaagttcggccggtactccgctctgatcatcggcatggcatacggcgccaagcgctaca 217
           |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct: 419 tcaagttcggccggtactccactctgatcctcggcatggcatactgcgccaagcgctaca 360

                                                                       
Query: 218 gttacctaaaaccccgggcagaggatgagaggagaatagcagcggaggaaaagaagagac 277
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 359 gttacctaaaaccccgggcagaggaggagaggagaacagcagcggaggaaaagaagagac 300

             
Query: 278 ta 279
           ||
Sbjct: 299 ta 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)