BAC Information

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BAC

Clone NameMSMg01-330L13
Chromosome2 (Build37)
Map Location 62,559,490 - 62,559,779
singlet/doubletsinglet
Overlap geneKcnh7
Upstream genePsmd14, Tbr1, LOC100039274, Slc4a10, Dpp4, Gcg, Fap, Ifih1, Gca
Downstream geneEG667257
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330L13.T7 (MSMg01no330_l13.b1)MSMg01-330L13.TJ (MSMg01no330_l13.g1)
ACCAG447201AG447202
length804777
length of high quality
(start - end)		280 (46 - 325)141 (75 - 215)
definitionCHROMAT_FILE: MSMg01no330_l13.b1 PHD_FILE: MSMg01no330_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:29 2005CHROMAT_FILE: MSMg01no330_l13.g1 PHD_FILE: MSMg01no330_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACACAGAAAAAAGGAGTCACTCCTGCAGAGGTACAATGAACTACA
TAAGCCCAGGTTCTTCTAACCCTTCCTATTCTTTCATGAAACATTTTAGA
AATCTTGTCTAATGTGTTTACACAATTTTACAACATTGTTCCCAAAAAAT
TTTAGTTTAGAGCATTTTTGTTTGTTTGTTTGGTTGGTTGGTTGGTTGGT
TGGTTTTTGCTGTTGTTTAGTTTGTTTTTTGTTTATTTTTTTATTTTTTG
TTGTTGGTGTTTTGTTTTGTTTTTGTTTGTTTTTTGGGTTTTTATTGTTT
TTGGTGGTATGTTTTTTTGGTTGTTCCCAAAACAGGGCCCCTTGTTTTTT
TTTTTTTTTTGTTGTTGTTTGTGGGTTTTTTAGAAAAAAAAAAAAAAAAA
TTGGGGGGGGGGGGTGGGGGTTTTTAGTTTTTTTTTTTTTGGTTTTGTTT
GATTGTTTGGTGGAATAGATGTTATTTAGATGTAAGTTGTACAACAATAT
AATATATTGTTTTCTTTTATGTATTTATTTTTTGTTATATAATTGTAATT
TATCTCACACAATATAAATTTCACCTTTCTATATCATTTATTTCACTCTT
CCTTATGCTATCTTTTCATCTTCTTGTCTTTTTGTTATTTCGGCGTAAGT
ATGTACTTATACTCACGACTAAGTTTTTGTAAACCTTTTATTCGCCTTAC
TTACATAATCATTAAGTTTGTTTTATCAAGATCTATATTCAATTCTCATT
TATC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGAGAGAATTGTGAAACAGAACTTT
TACCCTGAATTTGGAACATAGAACATATATATATATGTGTATATATATGT
ATATATATATATATATATATATATATATATATATATATATATATATATAT
ATATATATATATATAGATATATCCACATGGAGCTAGACAGAGGGTGTGTG
CGGAGACTCTGCTCTCGATCTCGCTGCGACTACCTCTACCCAGATAGACA
GATGTCCGGGGGGGCGGGCGGCCGCGTTTTTTTTCCACCCATGCGAGAGG
GTGGCTTAAAGACATTTTTTTTTTTCCCCCCCACCCCCCCGTGTTGGTCC
TATCTCTATTCTTGGCTACGCCTGCTCATATAAACAAAAAGAACTGGGGG
GCGGGGGGACATTCATCTCACTTATCCCTGGACATGGACTCCTCATAGCT
ACTAGGAGCCTGTCCCTCCCTCCTATCACCATACCTCCTTCCTTGCTCTT
TTCCGAATCCTTTACTTTCTGCCTATGCGCAAAATTCTTCCTTCCTGGAC
ACCTCCACGCCCCCACTTTGCGCCTGTGCATCTCCCCCTGTACCTCGTGC
ATCTACCTGCGTTCATTCCGTCTCCCCGCCGCTCTTTTGTTTGCCCGCTC
ACCCCTTCTTTTCCTCATTTCTCTTCTCCTTCCTTCCCCGCCGTTCCCCC
TCGCGACGTAACCTTCTTCCCCCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_l13.b1 MSMg01no330_l13.b1 CHROMAT_FILE:
MSMg01no330_l13.b1 PHD_FILE: MSMg01no330_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:29 2005
         (280 letters)



>mm_chr2_62559407_62560087
          Length = 681

 Score =  480 bits (248), Expect = e-140
 Identities = 274/290 (94%), Gaps = 14/290 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacacagaaaaaaggagtcactcctgcagaggtacaatgaactacataagcccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaattcacacagaaaaaaggagtcactcctgcagaggtacaatgaactacataagcccag 314

                                                                       
Query: 65  gttcttctaacccttcctattctttcatgaaacattttagaaatcttgtctaatgtgttt 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gttcttctaacccttccgattctttcatgaaacattttagaaatcttgtctaatgtgttt 254

                                                                       
Query: 125 acacaattttacaacattgttcccaaaaaa-ttttagtttagagcatttttgtttgtttg 183
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 253 acacaattttacaacattgttcccaaaaaaattttagtttagagcatttttgtttgtttg 194

                                                                       
Query: 184 tttg--------gttggttggttggttggttggtttttgctgttgttt-----agtttgt 230
           ||||        ||||||||||||||||||||||||||||||||||||     |||||||
Sbjct: 193 tttgtttggttggttggttggttggttggttggtttttgctgttgttttgtttagtttgt 134

                                                             
Query: 231 tttttgtttatttttttattttttgttgttggtgttttgttttgtttttg 280
           |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 133 tttttgtttatttttttattttttgttgttggtgttttgtttggtttttg 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 681
Length adjustment: 9
Effective length of query: 271
Effective length of database: 672
Effective search space:   182112
Effective search space used:   182112
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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