Query= MSMg01no330_n19.b1 MSMg01no330_n19.b1 CHROMAT_FILE:
MSMg01no330_n19.b1 PHD_FILE: MSMg01no330_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:40 2005
(317 letters)
>mm_chr2_58328207_58328924
Length = 718
Score = 505 bits (261), Expect = e-147
Identities = 302/317 (95%), Gaps = 5/317 (1%)
Strand = Plus / Minus
Query: 4 ggaattctgtagctaggcttcctctac-ac--caacttttgttgcttttctggaaaagat 60
||||||||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct: 518 ggaattctgtagctaggcttcctctacaactgc--cttttgttgcttttctggaaaagat 461
Query: 61 gtacgctaagcaatggtcatctttggctcacatgctagacctgggcagccataggtactc 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 460 gtacgctaagcagtggtcatctttggctcacatgctagacctgggcagccataggtaccc 401
Query: 121 cctatagtcaggtgtcagaacattaataattcgggatccaggctgggaactgtcttgccc 180
||| |||||||||||||| || |||||||| | |||||||||||||||||||||||||||
Sbjct: 400 cctgtagtcaggtgtcagtacgttaataatgctggatccaggctgggaactgtcttgccc 341
Query: 181 tgattcctgtcccatcagggttctgtttgaatgaaaaaggaacaagttagcctgtgtaca 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 340 tgattcctgtcccatcagggttctgtttgaatgaaagaggaacaagttagcctgtgtaca 281
Query: 241 tcgttttgcatacctatttgagttgtgatgtggtggaactgggagaaagggtgtagcttg 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 280 tcgttttgcataccaatttgagttgtgatgtggtggaactgggagaaagggtgtaccttg 221
Query: 301 tttccatgaaatgtttg 317
|||||||||||||||||
Sbjct: 220 tttccatgaaatgtttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space: 218372
Effective search space used: 218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no330_n19.g1 MSMg01no330_n19.g1 CHROMAT_FILE:
MSMg01no330_n19.g1 PHD_FILE: MSMg01no330_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:40 2005
(279 letters)
>mm_chr2_58163826_58164504
Length = 679
Score = 509 bits (263), Expect = e-148
Identities = 275/279 (98%)
Strand = Plus / Plus
Query: 1 aatgacgtacacagcatttcttgtagacataatagttaatgggtacaaaccatacatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aatgacgtacacagcatttcttgtagacataatagttaatgggtacaaaacatacatttc 260
Query: 61 ctcttctatggataatgtttagaactcaattacggcaacctattgtcatagagtaatctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttctatggataatgtttagaactcaattacggcaacctattgtcatagagtaatctt 320
Query: 121 aataaagtcatgaaaatgcttgggcaaaaatgaatatacacttaataattaaaaaaatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataaagtcatgaaaatgcttgggcaaaaatgaatatacacttaataattaaaaaaatgt 380
Query: 181 ttcacctaaatgaaaaataacagagaaatctttccattaatactgttaacataataattg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcacctaaatgaaaaataacagagaaatctttccattaatactgttaacataataattt 440
Query: 241 ggcacaattctgtatacctcagtattttggaatctggag 279
| |||||||||||| ||||||||||||||||||||||||
Sbjct: 441 gacacaattctgtaaacctcagtattttggaatctggag 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
