BAC Information

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BAC

Clone NameMSMg01-330P17
Chromosome2 (Build37)
Map Location 139,690,827 - 139,691,158
singlet/doubletsinglet
Overlap geneTasp1
Upstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik
Downstream geneLOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330P17.T7 (MSMg01no330_p17.b1)MSMg01-330P17.TJ (MSMg01no330_p17.g1)
ACCAG447396AG447397
length727729
length of high quality
(start - end)
339 (382 - 720)345 (385 - 729)
definitionCHROMAT_FILE: MSMg01no330_p17.b1 PHD_FILE: MSMg01no330_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:49 2005CHROMAT_FILE: MSMg01no330_p17.g1 PHD_FILE: MSMg01no330_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCCTAGTCACTCCCATTCTCAGGGTGTAATAGTGGGGTGATGGG
CGAGCAACTAATCAGGAGCTGCCACGCCATATCAGGTGCTGAAACGTCAC
GCTGCGGGTTATAAAAGCAACGCCATTTTCCCGGTTTGGGATCTTCCTGA
GAAGCAAGCAATAAAGCTCTTGCCGCGGAAGATTCTGGTTTGTTGCGTCT
TTCTTGCCGGTGGAGCGGGACACAATATTTTTATATATTAAAAAATAATC
AGGCCGGGCGGTGGTGGCACACATCTTTAATCCCAGCACTTGGGAGGTAG
AGACAGGTGTATTTCTGAGCCCCACCCCCCGCCTGGTCTACAGAGCGAGT
TCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAATC
AATCAATCAATCAATAAATAAATAATCAGAATCAACAAAACAACAATCTA
GCTGACAACATTCCCAAATTACTTTTGCATTCCAAATTTTTAAAATGCCA
ATGTAATAAGTTTGTAAAAAAAAAAAAAAAACTAGAAAACATGTTTATCT
CAAAGATAAAACTCAGCCTGCATGTAAGCTGTAAAAAGAAAATATATTGA
GAGCTGCAGGAGAGGAATACTTTACCACATATGAAGGCAGCCATGAAGTA
ATAGCTAGTTTTCCCAACAGAAACTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATCTGAGGAATACCGAATGGCT
GAGAAGCACCTGAAAAAATGTTCACCATCCTCAATCATCAGGGAAATACA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGACTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATC
CTGCAGTACTTCNCTCNGTGCCCCCCCCCCCAACATGTTCCAACCAGTAA
GAAGGACACATGCTCCACTATGTTCATAACAAACTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAAGCAAGTGGATGGACCTGGAGGGCATCATCCCGA
GTGAGGTAACCCAATCACAAAGGAACTCACATGATATGTACTCACTGATA
AGTGGATATTAGCCCAGAAACTTAGAATACCCAAGTTATAGGATACAATT
TGCGCAGCACATGAGACTCAGGAGGAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_p17.b1 MSMg01no330_p17.b1 CHROMAT_FILE:
MSMg01no330_p17.b1 PHD_FILE: MSMg01no330_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:49 2005
         (339 letters)



>mm_chr2_139690623_139691358
          Length = 736

 Score =  605 bits (313), Expect = e-177
 Identities = 330/339 (97%), Gaps = 7/339 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggtctacagagcgagttccaggacagccagggctacacagagaaaccctgtctcgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cctggtctacagagcgagttccaggacagccagggctacacagagaaaccctgtctcgaa 264

                                                                       
Query: 61  aaaccaatcaatcaatcaatcaataaataaataatcagaatcaacaaaacaacaatctag 120
           |||||||||||||||||||||||| |||||    ||||||||||||||||||||||||||
Sbjct: 265 aaaccaatcaatcaatcaatcaatcaataa----tcagaatcaacaaaacaacaatctag 320

                                                                       
Query: 121 ctgacaacattcccaaattacttttgcattccaaatttttaaaatgccaatgtaataagt 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ctgacaacattcccaaattacttttgcattccaattttttaaaatgccaatgtaataagt 380

                                                                       
Query: 181 ttgtaaaaaaaaaaaaaaaactagaaaacatgtttatctcaaagataaaactcagcctgc 240
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtaaaaaaaaaaaaa---ctagaaaacatgtttatctcaaagataaaactcagcctgc 437

                                                                       
Query: 241 atgtaagctgtaaaaagaaaatatattgagagctgcaggagaggaatactttaccacata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atgtaagctgtaaaaagaaaatatattgagagctgcaggagaggaatactttaccacata 497

                                                  
Query: 301 tgaaggcagccatgaagtaatagctagttttcccaacag 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgaaggcagccatgaagtaatagctagttttcccaacag 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 736
Length adjustment: 9
Effective length of query: 330
Effective length of database: 727
Effective search space:   239910
Effective search space used:   239910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)