Query= MSMg01no331_a24.b1 MSMg01no331_a24.b1 CHROMAT_FILE:
MSMg01no331_a24.b1 PHD_FILE: MSMg01no331_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:55 2005
(638 letters)
>mm_chr2_69081188_69082225
Length = 1038
Score = 847 bits (438), Expect = 0.0
Identities = 471/482 (97%), Gaps = 1/482 (0%)
Strand = Plus / Minus
Query: 157 ctagacattttatttactaattttgtcaacaacaacaacaacaacaaatccacagcaaat 216
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 1038 ctagacattttatttactaattttgtcaacaacaacaacaa-aaaaaatccacagcgaat 980
Query: 217 atgtatgctgggtactaacactgcattttgcaggtcagtttgtagctcaaagacgtttaa 276
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 979 atatatgctgggtactaacactgaattttgcaggtcagtttgtagctcaaagacgtttaa 920
Query: 277 caagctgctgatgttcagatgttcagtaagcgacagagtataacttcaaaccaagactgg 336
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 919 caagctgctgatgttcagatgttcagtaagcaacagagtataacttcaaaccaagactgg 860
Query: 337 tgtcccagaatgttctttcaagggaagaagccaaccaaagaggcgctgaaggcctctctt 396
| |||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 859 tatcccagaaagttctttcaagggaagaagccaaccaaagaggtgttgaaggcctctctt 800
Query: 397 cccctgggattagcctatcttgtaaaagatctttgggtaaaagtctagaaatcagagaat 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cccctgggattagcctatcttgtaaaagatctttgggtaaaagtctagaaatcagagaat 740
Query: 457 ttcaaaccaaagatctcctatgtgggatcttagttggatacaggaagagatcaaaaatat 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttcaaaccaaagatctcctatgtgggatcttagttggatacaggaagagatcaaaaatat 680
Query: 517 aacccttaaaggaatgcagagatgggaataacttccctcattgcccagcacacaattcat 576
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 679 aacccttaaaggaatgcagagatgggaataacttccctcattgcccagcacacacttcat 620
Query: 577 tattgaatatttgtagctagatttgttatattttacaggagccaatcattctttctaagt 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tattgaatatttgtagctagatttgttatattttacaggagccaatcattctttctaagt 560
Query: 637 tc 638
||
Sbjct: 559 tc 558
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_a24.g1 MSMg01no331_a24.g1 CHROMAT_FILE:
MSMg01no331_a24.g1 PHD_FILE: MSMg01no331_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:55 2005
(569 letters)
>mm_chr2_68902802_68903765
Length = 964
Score = 926 bits (479), Expect = 0.0
Identities = 551/583 (94%), Gaps = 16/583 (2%)
Strand = Plus / Plus
Query: 1 atctttcattggaacacagcagcagggcagtttgtattgtctgccagaggccttttggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 184 atctttcattggaacacagcagcagggcagtttgtattgtctgccagaggcctcttggca 243
Query: 61 tcatctgcctt----ca--at--------aacctaggaaggctccggatagtgtaaagat 106
||||||||||| || || || |||||||||||||||||||||||||||
Sbjct: 244 tcatctgccttttggcatcatctgccttcaa--taggaaggctccggatagtgtaaagat 301
Query: 107 tcgctagtgtttcagtagcttcaagaacagctatgttgtgcctgtgagcaattcctcaca 166
|||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 302 tcgctagtgttttagtagcttcaagaacagctttgttgtgcctgtgtgcaattcctcaca 361
Query: 167 caactcagtgtggtcatcatttctcgtctgtctgtgaggtaagactctgggtctgaggat 226
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 caactcagtgtggtcatcatttctcgtctgtctgtgaggtaagactctgggtctgaggaa 421
Query: 227 tgggggtggcctgggttagcaggtggtgtgactttgttctgttttgggatgaagcactaa 286
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 422 tgggggtggcctgggttagcaggtggtgtgactttgttctgtttggggatgaagcactaa 481
Query: 287 cagaggcaagacagactgttttcctgccactggtagccaccatcagtgctgtaccactag 346
|||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||
Sbjct: 482 cagaggcaagacagactgttttcctgccaccggtggccaccgtcagtgctgtaccactag 541
Query: 347 cccacagactgagtccattgaaactacatcactgtgttttaattattaaatacctaacct 406
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tttagagactgagtccattgaaactacatcactgtgttttaattattaaatacctaacct 601
Query: 407 catggatggaactggcatatggtttagatctcagagattgacctaggtgtgaggttatca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 catggatggaactggcatatggtttagatctcagagattgacctaggtgtgaggttatca 661
Query: 467 atgcaaccccttcctgggatccaaaatgatccttgagcatcttcaccaatgggaacacaa 526
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 662 atgcaaccccttcctgggatccaaaatgatccttgagcatcttcaccaaaaggaacacaa 721
Query: 527 agcttgtagaagtattagaggtgtcaagggtgacttttagaaa 569
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 722 agcttgtagaagtattagaggtctcaagggtgacttttagaaa 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 964
Length adjustment: 10
Effective length of query: 559
Effective length of database: 954
Effective search space: 533286
Effective search space used: 533286
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
