BAC Information

Click to search

BAC

Clone NameMSMg01-331B22
Chromosome2 (Build37)
Map Location 105,851,511 - 105,989,603
singlet/doubletdoublet
Overlap geneLOC668765
Upstream geneGa17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4
Downstream geneDcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331B22.T7 (MSMg01no331_b22.b1)MSMg01-331B22.TJ (MSMg01no331_b22.g1)
ACCAG447499AG447500
length771732
length of high quality
(start - end)		368 (50 - 417)528 (75 - 602)
definitionCHROMAT_FILE: MSMg01no331_b22.b1 PHD_FILE: MSMg01no331_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:58 2005CHROMAT_FILE: MSMg01no331_b22.g1 PHD_FILE: MSMg01no331_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,851,511 - 105,851,874)(105,989,050 - 105,989,603)
sequence
NCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACCAGTGCACGTTGACTGCAGCACCTGGTTTGAAATGCAAG
TGCATATGAATGGGTGTGCGCATGTAGAAGATGTTTGACTTTATTAATAT
GACTTATCTTTTGTTATGGGAAATGAGACATACCATTCGTTTCATTAGTA
AGATGGACACGAGATTAGCAGCATAGGTACCTCCCTTACTGACGCTCCTC
GAAGATAAACTGCGCTCTGTGCTGTGTAACCAGGGAGCATTACTAGCTTT
TTGCTTGTTTTTCTTCTTTGTCCTTAAATTTTTTTCAGCAGCATCAATAA
ACATCGAATGGAGAAAGGCATGTACATATAAATAAATGCTTTATTTCTTC
TGTAAAACTGCCCACAGTTCCCCCCCCCCACACATTGTCATATTGGTTAA
CACCATCAAAATTTTCTAACAGTTATTATTATGTTGACCTTAGTGTTATG
ATACATATATTTCATAGTTGAACTCTGGTGGACCCAGGAAGACGTGAGTG
TATCTTCTTTAGTTCTTCATGCTCCTGTGTATGACTCTACCCCCGCCCCC
CAGATTTTTATTATGTTTCTTCCTCCTTATCTCCGTTGTTTCTGTTCCCC
TCTCCCTTTCGTTTACTTTCCTTCGGCTTTCTACTATTTGCTTTTTAATT
TATCTTTTACGCTATCGTATGTCCTTCCTCTTAATCTTTCTCTCTCTTTC
TTTCTTTATCTTTCCTTCCTN

NCCAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATCTGTTCTTGCTGTAAATAGAATG
GTTGGTTTTTGAGGCAATCAAAGAGAGTTTTTAAAGTCTCTCTCTCTCTC
ATGTGTGTGTGTGTATCTATATGTGAAAGATAAGGTGTATTTAGTAGGTA
TCACATTTTGGAGAGAGTAATAAAACTCCTTTAAGAAGTGTGTTTGACAC
TTGCGATAAAGAAATCCCAATGATTTGTGACTTAAGATTAAAAGTCCTTT
ATAGTTCAAAATGCACTAAATTCAAAATATATAAATATTGTTAGACTTGT
ATGTATTTTATCTTGGTGTTTGCTAAATAGATAGCATTTATTCAAAGCAG
GTAAGATACTATGAAAACACACGGACGGGCTTCCAGGTTTATAATTAACT
TGAGTAAATGACAAATACAACCATATCTATTTAATGAATGACCCTTATAT
TATAAATGCCTGATATCTTTGGGCAAAACCTTTTGATAGGCCAAATTTCT
TTTCAAAAGATTTGTCTTCATTTATTTTGTGTGTGGTGTTAGTGGGGGAG
TGATATGACTTGCGCTTGGAGGTCAGATGACAATTTGCAGGACTTGGTTC
TTCTCTCTTTTTTTGTTGAATATTTTTATTAAATATTTTCTTCATTTATA
TCTCACATATTATCTTTATAGGCTCCTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_b22.b1 MSMg01no331_b22.b1 CHROMAT_FILE:
MSMg01no331_b22.b1 PHD_FILE: MSMg01no331_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:58 2005
         (368 letters)



>mm_chr2_105851308_105852074
          Length = 767

 Score =  652 bits (337), Expect = 0.0
 Identities = 358/365 (98%), Gaps = 1/365 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaccagtgcacgttgactgcagcacctggtttgaaatgcaagtgcatatgaatg 63
           |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 204 ggaattcaccagtgcaagttgactgcagcacctgatttgaaatgcaagtgcatatgaatg 263

                                                                       
Query: 64  ggtgtgcgcatgtagaagatgtttgactttattaatatgacttatcttttgttatgggaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtgtgcgcatgtagaagatgtttgactttattaatatgacttatcttttgttatgggaa 323

                                                                       
Query: 124 atgagacataccattcgtttcattagtaagatggacacgagattagcagcataggtacct 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 atgagacataccattcgtttcattagtaagatggacacgagattagcagcatcggtacct 383

                                                                       
Query: 184 cccttactgacgctcctcgaagataaactgcgctctgtgctgtgtaaccagggagcatta 243
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 384 cccttactgacgctcctcgaagataaactgcgc-ctgcgctgtgtaaccagggagcatta 442

                                                                       
Query: 244 ctagctttttgcttgtttttcttctttgtccttaaatttttttcagcagcatcaataaac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctagctttttgcttgtttttcttctttgtccttaaatttttttcagcagcatcaataaac 502

                                                                       
Query: 304 atcgaatggagaaaggcatgtacatataaataaatgctttatttcttctgtaaaactgcc 363
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 503 atcgaatggagaaaggcatgcagatataaataaatgctttatttcttctgtaaaactgcc 562

                
Query: 364 cacag 368
           |||||
Sbjct: 563 cacag 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 767
Length adjustment: 9
Effective length of query: 359
Effective length of database: 758
Effective search space:   272122
Effective search space used:   272122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no331_b22.g1 MSMg01no331_b22.g1 CHROMAT_FILE:
MSMg01no331_b22.g1 PHD_FILE: MSMg01no331_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:59 2005
         (528 letters)



>mm_chr2_105988731_105989657
          Length = 927

 Score =  882 bits (456), Expect = 0.0
 Identities = 515/562 (91%), Gaps = 44/562 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatctgttcttgctgtaaatagaatggttggtttttgaggcaatcaaagagagtttttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tatctgttcttgctgtaaatagaatggttggtttttgaggcaatcaaagagagtttttaa 814

                                                                       
Query: 61  agtctctctctctctc------------------------------------atgtgtgt 84
           ||||||||||||||||                                     |||||||
Sbjct: 813 agtctctctctctctctctctctctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 754

                                                                       
Query: 85  gtgtgtatctatatgtgaaagataaggtgtatttagtaggtatcacattttggagagagt 144
           ||||||||||||||||||||||||||||       |||||||||||||||||||||||||
Sbjct: 753 gtgtgtatctatatgtgaaagataaggt-------gtaggtatcacattttggagagagt 701

                                                                       
Query: 145 aataaaactcctttaagaagtgtgtttgacacttgcgataaagaaatcccaatgatttgt 204
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 700 aataaaactcctttaagaagtgtg-ttgacacttgcgataaagaaatcccaatgatttgt 642

                                                                       
Query: 205 gacttaagattaaaagtcctttatagttcaaaatgcactaaattcaaaatatataaatat 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gacttaagattaaaagtcctttatagttcaaaatgcactaaattcaaaatatataaatat 582

                                                                       
Query: 265 tgttagacttgtatgtattttatcttggtgtttgctaaatagatagcatttattcaaagc 324
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 581 tgttagacttgtatgtattttatcttggtgtttgctaaatagatagcatgtattcaaagc 522

                                                                       
Query: 325 aggtaagatactatgaaaacacacggacgggcttccaggtttataattaacttgagtaaa 384
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 521 aggtaagatactatgaaaacacagggacgggcttccaggtttataattaacttgagtaaa 462

                                                                       
Query: 385 tgacaaatacaaccatatctatttaatgaatgacccttatattataaatgcctgatatct 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tgacaaatacaaccatatctatttaatgaatgacccttatattataaatgcctgatatct 402

                                                                       
Query: 445 ttgggcaaaaccttttgataggccaaatttcttttcaaaagatttgtcttcatttatttt 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttgggcaaaaccttttgataggccaaatttcttttcaaaagatttgtcttcatttatttt 342

                                 
Query: 505 gtgtgtggtgttagtgggggag 526
           ||||||||||||||||||||||
Sbjct: 341 gtgtgtggtgttagtgggggag 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 927
Length adjustment: 10
Effective length of query: 518
Effective length of database: 917
Effective search space:   475006
Effective search space used:   475006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |