BAC Information

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BAC

Clone NameMSMg01-331C23
Chromosome2 (Build37)
Map Location 48,732,983 - 48,733,553
singlet/doubletsinglet
Overlap geneAcvr2a
Upstream geneLOC383691, LOC100041457, LOC383692
Downstream geneOrc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331C23.T7 (MSMg01no331_c23.b1)MSMg01-331C23.TJ (MSMg01no331_c23.g1)
ACCAG447548AG447549
length7451,398
length of high quality
(start - end)
573 (46 - 618)---
definitionCHROMAT_FILE: MSMg01no331_c23.b1 PHD_FILE: MSMg01no331_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:03 2005CHROMAT_FILE: MSMg01no331_c23.g1 PHD_FILE: MSMg01no331_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAATCCGCGGA
ATTCCTGTAATAAATCTCCAGATACTTTTAGAACCTTGCCTTGAGACAGA
ACTGTAGTTTTGGAGGATGTACAATAAGTTGAAGTAGTCCTAGCTTCTAT
AAGACAGAGACATGGTTCCCGAGTCAAGAAGCAGCCTCTCGCTTTGTACT
ATATAGGCCACTTTTCTTTTGCTTCTGCTGGAGCTCTTTCCACACATAGG
AAGAAGCTCATCCACAGGGAGTAAATTGAATGCAAACTGGTTTTTCTGGT
GATGGTGAGTCATGAGTATGAGGGAATTGACGGACTGACTCTCTTATTAA
GCCTTATTGTCGTAAAGAGTTAATGTGGTTTCAGTAAAACTGTTTGTGAA
CTTAAGTTTCCTGTTTATAACACCTGTGTTCATGCTGAGAATACCTGCCG
CTTGGTAAGGTAAAGATTAGAGTCTAGAAATTGCTTACCTTAAATAAGAT
ACAAAGTTAGCTTTTTGTTCATTTCAAAAGGCTGTATATCTAGCACTTTA
GTATTGCAACATTGTTCTTTTTAAAGTGACATCTACTTCCTTAGTCCTTA
TGAAATTTTGTCTGGTTGTTGGTTTGAGATGGAGTAAGGGCTTTCATATG
TTGGGGATCCCCATGTTGAGCATGCCAAGTAACCATTGATCTTAATATTT
AAGCAGTAATAGGATGACATTTCATGCTGTGCCAAATTACTACCC
TATTGGATAGTAATTGGAGTGCGATGGGAGGTGTCTCCCCACATCTATAC
AGTGGCCGCCGTGAGAGTGTTGCTTACTTTACCCGACAATAATAAGCGCC
CAGTACGCGAATACGCTTATAGAATGCATTCAGCGTGTCTTTATTCCTTT
CGCGATCCACGCTACTGACTGTGCGTNACCTGCGTCTCTCCGCGCGCGTA
GAGCGCGATGACGATAATCACTCTAGCTAAGAACGGAACCATAACAGTAG
CCACGGATCATCNCAACCTAGACGACTATTGAATATTGCGAGCGCGCTAA
CGCGAGCGCGCACGCGTGTTATCTGAGTAATAATCTGTGCGCACGCGCAC
TGTCCGCCACAGCTACTAATTCCGACCGATGATTTGGTACGCGCATCACC
AAGTCAATGATGGCTCGTGAATAATGTACGATACTTGTACGTCACTGAAG
AGCGCCCAAACTCGCGCAATATGCTAATGAGATAGGAAAGGCATATGCTT
ATACGAGTGACGTGATTCCGCAATAGAGCGCGGCTGAGAGAGAAGATGAG
TATCGCGCAGCCATACACCGCACGCACCCGCTAGAATAGCTAGACTCACA
ATGTGACTGTACAAGAGAGNAGTAGTCGCAGTACTACAGTTGATGTTACA
TAGTATAGCGAAACTCACGAACCCGCAACAATCGCGCGACAGAGAATTAG
AGTGTGAAAGCGAGCTGAATATTAGACGCGCGCATATATAAGTGTCGTGC
TCGCAGGCGCGCAGATAGATGCCACATGTCACTGAAGCTTCACGGCATAG
ATGATACATAATACATAGCGTACGCGATTTGGCGTACGATGATCTCTACA
CCAGGCTACCGCGATGTAATGAGACTGAGATAACATAACGCTGAGAACAT
GAGACATGGTTACGCACATACTGAGTACACGAACTGAATAGACGCAGTTA
TGCGAACGCAGATGAAGAGATACAGTAACGTGAATGCATGGCTTAGTACA
CAGATGTAGAAGCAACCAATCGTTAACAAATCGAAGCGAATAACTGTGTC
ATTATAATACATAACAAGAACGCTGATGAAACGAGAGAGAACAGCACTAG
CTAAGGTAAGCTTCTCACGGCAAACAGTAGGCTATGTAGAAAGTACTATA
TATGATATACNAGGAGACATCAACAAGCAATGAGACAACATACACGACAA
CAGCTCAGAAGTGATATACGTCAGAGCAGCTTATGGACGAAATCTCACAA
GATANAGACTACAACATGCACGATGACTAGCGAGAAACGACGTAAAGATA
CTCNGTGTAATATTATATCCAAGGACTGCACACNCAACATAGAGCGTGNA
CTGTANAGATCAGTAATTGAATCTCTCACCGATCTACGAATATACGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_c23.b1 MSMg01no331_c23.b1 CHROMAT_FILE:
MSMg01no331_c23.b1 PHD_FILE: MSMg01no331_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:03 2005
         (573 letters)



>mm_chr2_48732781_48733753
          Length = 973

 Score = 1075 bits (556), Expect = 0.0
 Identities = 568/572 (99%), Gaps = 2/572 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcctgtaataaatc-tccagatacttttagaaccttgccttgagacagaactgta 61
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcctgtaataaa-catccagatacttttagaaccttgccttgagacagaactgta 261

                                                                       
Query: 62  gttttggaggatgtacaataagttgaagtagtcctagcttctataagacagagacatggt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gttttggaggatgtacaataagttgaagtagtcctagcttctataagacagagacatggt 321

                                                                       
Query: 122 tcccgagtcaagaagcagcctctcgctttgtactatataggccacttttcttttgcttct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcccgagtcaagaagcagcctctcgctttgtactatataggccacttttcttttgcttct 381

                                                                       
Query: 182 gctggagctctttccacacataggaagaagctcatccacagggagtaaattgaatgcaaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gctggagctctttccacacataggaagaagctcatccacagggagtaaattgaatgcaaa 441

                                                                       
Query: 242 ctggtttttctggtgatggtgagtcatgagtatgagggaattgacggactgactctctta 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctggtttttctggtgatggtgagtcatgagtatgagggaattgacggactgactctctta 501

                                                                       
Query: 302 ttaagccttattgtcgtaaagagttaatgtggtttcagtaaaactgtttgtgaacttaag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttaagccttattgtcgtaaagagttaatgtggtttcagtaaaactgtttgtgaacttaag 561

                                                                       
Query: 362 tttcctgtttataacacctgtgttcatgctgagaatacctgccgcttggtaaggtaaaga 421
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttcctgtttataagatctgtgttcatgctgagaatacctgccgcttggtaaggtaaaga 621

                                                                       
Query: 422 ttagagtctagaaattgcttaccttaaataagatacaaagttagctttttgttcatttca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttagagtctagaaattgcttaccttaaataagatacaaagttagctttttgttcatttca 681

                                                                       
Query: 482 aaaggctgtatatctagcactttagtattgcaacattgttctttttaaagtgacatctac 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaaggctgtatatctagcactttagtattgcaacattgttctttttaaagtgacatctac 741

                                           
Query: 542 ttccttagtccttatgaaattttgtctggttg 573
           ||||||||||||||||||||||||||||||||
Sbjct: 742 ttccttagtccttatgaaattttgtctggttg 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)