BAC Information

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BAC

Clone NameMSMg01-331D07
Chromosome2 (Build37)
Map Location 55,154,512 - 55,351,656
singlet/doubletdoublet
Overlap geneKcnj3
Upstream geneLOC100041792, LOC100042878, Galnt13, LOC666936
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331D07.T7 (MSMg01no331_d07.b1)MSMg01-331D07.TJ (MSMg01no331_d07.g1)
ACCAG447564AG447565
length730731
length of high quality
(start - end)		681 (47 - 727)649 (77 - 725)
definitionCHROMAT_FILE: MSMg01no331_d07.b1 PHD_FILE: MSMg01no331_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:04 2005CHROMAT_FILE: MSMg01no331_d07.g1 PHD_FILE: MSMg01no331_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,154,512 - 55,155,189)(55,351,008 - 55,351,656)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGAGGGATTGCTTTTAAGCAGAGACATTCAGTCAAAAGCCTTGA
GAAGCCAATTTGAATCAGGCAGCTTAGACAGGCATTTGGGCCAGAACAGC
AAAGATGAAATAGTGAGCCAGAGTTCAGAAAGAGCTCAAAGGTGAGTTTA
TTGAGCTATAAATCTTGGAGCATGAAGCATTCTAAGCCTGTGACTGAGGA
AAGAGTTTGGCAGCTGGAGCCTTCATGGTCTGGGCTTGGAGAAGCTAGAA
GCTGCCAGGCCTAGGCCTAGGGATAGATTGAAACATGATGGGTTTAGCTT
AAGCCATGTATCTGTAAAGCTTGGATATGGCTCTCATCGTATTCCTCCAT
CTGAGGAAATAAACAACATTTATAGTACTTTGTTATAAACAATTTTCAAA
TTCAGAACAGGTTTTAAACCTATTTCCAACAAGATTTTTTTTTAAGTTCT
ATGGAATATACTATACCTCATGGAAGTATTCCTTAGATATGATACAAATA
GATGTGTTCAAAGTGATAAATTGAGCTTTTGTGAATTGGGACCCTCTTCT
TAGAATTATAGAAGTGGAAAATGAGCTGCTTTGCTTTGCGCCAGGCATAT
TTATGATCTAGACTCCCTGCTGACTGTAAACTGCATCAGCATGAAAAGCA
CATGAACTGGCAGAGGCAGAGCAAGGATTT

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTTTTGAATTTGTACCTGCT
GATTTGCAATTACAAAAATGATGCTGTTATAGACCAGTGTATCTTTGAAA
TCATCAGTCTTAACTAAACCCTATGTTCAGTGTTAAGAACCCTACAGTCT
TTAGGCTGCATCAAGCTGTGCAGTGAAGTTTGGTGGAAAGAAGTTACAGT
AAAGATGGCTATATACCCTGCTAGCTGCTCCTTCTTGTTAGTTTAGTGTC
AATATTGGTCCACATTATTTTTTATATGTGGCCACATCTTTTTCTAATCT
AATTATTGACAGCTTCTCTTATTGGTGACACATACAAGAGGACAGACTGG
ATGACAGCCTGATTAAAGACTTTGAGAAATGGTGCAGACAGGTACACATT
TGGAAGTAACTGTGGATATTTAAAATTGACAAATTCATTCTTAACATACT
CACTACTACTTTTTAAATGACCACTAAGATTCTGAAGATATAACTAGGTT
TTTTGCGTTTTGTTGCTTAATGAGTAGAATATATAGATAATGTTAATGAT
AACAGTACTATAATTTGGGCCAAGAGACATAAAAATTAGCATTTAGACAG
TAAGGATGGCAAGTGTGATAGGTGAGTAACTCTGTACTAGTCAATTTAAC
CATATCAAACCAAGAAGTTTTCTTGCAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_d07.b1 MSMg01no331_d07.b1 CHROMAT_FILE:
MSMg01no331_d07.b1 PHD_FILE: MSMg01no331_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:04 2005
         (681 letters)



>mm_chr2_55154309_55155389
          Length = 1081

 Score = 1265 bits (654), Expect = 0.0
 Identities = 672/678 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagagggattgcttttaagcagagacattcagtcaaaagccttgagaagccaat 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagagggagtgtttttaagcagagacattcagtcaaaagccttgagaagccaat 263

                                                                       
Query: 64  ttgaatcaggcagcttagacaggcatttgggccagaacagcaaagatgaaatagtgagcc 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 264 ttgaatcaggcagcttagacaggcatttgggccagaacagcaaagatgaaatagcgatcc 323

                                                                       
Query: 124 agagttcagaaagagctcaaaggtgagtttattgagctataaatcttggagcatgaagca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agagttcagaaagagctcaaaggtgagtttattgagctataaatcttggagcatgaagca 383

                                                                       
Query: 184 ttctaagcctgtgactgaggaaagagtttggcagctggagccttcatggtctgggcttgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttctaagcctgtgactgaggaaagagtttggcagctggagccttcatggtctgggcttgg 443

                                                                       
Query: 244 agaagctagaagctgccaggcctaggcctagggatagattgaaacatgatgggtttagct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaagctagaagctgccaggcctaggcctagggatagattgaaacatgatgggtttagct 503

                                                                       
Query: 304 taagccatgtatctgtaaagcttggatatggctctcatcgtattcctccatctgaggaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taagccatgtatctgtaaagcttggatatggctctcatcgtattcctccatctgaggaaa 563

                                                                       
Query: 364 taaacaacatttatagtactttgttataaacaattttcaaattcagaacaggttttaaac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taaacaacatttatagtactttgttataaacaattttcaaattcagaacaggttttaaac 623

                                                                       
Query: 424 ctatttccaacaagatttttttttaagttctatggaatatactatacctcatggaagtat 483
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 ctatttccaacaagatttttttttaagttctatggaatatactatacctcttggaagtat 683

                                                                       
Query: 484 tccttagatatgatacaaatagatgtgttcaaagtgataaattgagcttttgtgaattgg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tccttagatatgatacaaatagatgtgttcaaagtgataaattgagcttttgtgaattgg 743

                                                                       
Query: 544 gaccctcttcttagaattatagaagtggaaaatgagctgctttgctttgcgccaggcata 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaccctcttcttagaattatagaagtggaaaatgagctgctttgctttgcgccaggcata 803

                                                                       
Query: 604 tttatgatctagactccctgctgactgtaaactgcatcagcatgaaaagcacatgaactg 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 804 tttatgatctagactccctgctgactgtaaactgcatcagcatgaaaagcacatgtactg 863

                             
Query: 664 gcagaggcagagcaagga 681
           ||||||||||||||||||
Sbjct: 864 gcagaggcagagcaagga 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no331_d07.g1 MSMg01no331_d07.g1 CHROMAT_FILE:
MSMg01no331_d07.g1 PHD_FILE: MSMg01no331_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:04 2005
         (649 letters)



>mm_chr2_55350808_55351856
          Length = 1049

 Score = 1178 bits (609), Expect = 0.0
 Identities = 639/649 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctttttgaatttgtacctgctgatttgcaattacaaaaatgatgctgttatagacca 60
           ||||| ||||||||||||||||||||||||| | |||||||||||| |||||||| ||||
Sbjct: 849 cctctctttgaatttgtacctgctgatttgcgactacaaaaatgatactgttataaacca 790

                                                                       
Query: 61  gtgtatctttgaaatcatcagtcttaactaaaccctatgttcagtgttaagaaccctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gtgtatctttgaaatcatcagtcttaactaaaccctatgttcagtgttaagaaccctaca 730

                                                                       
Query: 121 gtctttaggctgcatcaagctgtgcagtgaagtttggtggaaagaagttacagtaaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gtctttaggctgcatcaagctgtgcagtgaagtttggtggaaagaagttacagtaaagat 670

                                                                       
Query: 181 ggctatataccctgctagctgctccttcttgttagtttagtgtcaatattggtccacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 669 ggctatataccctgctagctgctccttcttgttagtttagtgtcaatattggttcacatt 610

                                                                       
Query: 241 attttttatatgtggccacatctttttctaatctaattattgacagcttctcttattggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 attttttatatgtggccacatctttttctaatctaattattgacagcttctcttattggt 550

                                                                       
Query: 301 gacacatacaagaggacagactggatgacagcctgattaaagactttgagaaatggtgca 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 549 gacacatacaagaggacagactggatgacagcctgattaaagattttgaaaaatggtgca 490

                                                                       
Query: 361 gacaggtacacatttggaagtaactgtggatatttaaaattgacaaattcattcttaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gacaggtacacatttggaagtaactgtggatatttaaaattgacaaattcattcttaaca 430

                                                                       
Query: 421 tactcactactactttttaaatgaccactaagattctgaagatataactaggttttttgc 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tacgcactactactttttaaatgaccactaagattctgaagatataactaggttttttgc 370

                                                                       
Query: 481 gttttgttgcttaatgagtagaatatatagataatgttaatgataacagtactataattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gttttgttgcttaatgagtagaatatatagataatgttaatgataacagtactataattt 310

                                                                       
Query: 541 gggccaagagacataaaaattagcatttagacagtaaggatggcaagtgtgataggtgag 600
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 309 gggccaagagacataaaaattagcatttagacagtaaggatggcaaatgtgataggtgag 250

                                                            
Query: 601 taactctgtactagtcaatttaaccatatcaaaccaagaagttttcttg 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 taactctgtactagtcaatttaaccatatcaaaccaagaagttttcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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