TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAAGTGAAACCGCTTCAAATTTACTTAAGAAGTTCTGCTTCTT
CTTGTTTTAGTGCTCCTTAAACTTTAGAAAACAACTCCCGGGATCAAAAT
TGGTTGACCACCAATGCTAAAATTCTGAAGTGGGCCTTGCTGCTTTACTT
TGGCTTCTCCAGGTCCCCTAACCAGGATCCATAATGCCAAGATCAAGAGT
AGAAAAAGCCCTCCTATGAACAGAGATACAACACTGAATGACAGAAGACA
TGTATAATCTTTTCCATTCACTTTAGTTCCAAACTACAAACTGTACTCTG
TGGGAGAAAGAAATGAACTCTAAAAGGAAAGCAAATGATACAGCTTTCAT
AGACGTGTTGGATTACAAAAACAAACAAACACAAAATAAGTTCTAGTGAA
AAATATGTTTTCTAGCTATATAATAGTCACTCATGTTAATTCATGATTAA
GAAAGTAAAGAAGCTAGATAGCATAAACTGGGCCAAGAACCTGGAAATCC
AACAGCAAAAATACATTTGTTTTCCTTTTTCAAAATAGTCTTCTATTTTA
TTTTTTGCTNGTTGTCTCCTTCAAAGCTCAATGGCTGTCTTGAGAAATCC
TGTTTTCTATAAGCAGAGAACCAACTTGTTAGCTAATTTAATTTATCTCT
GTCCAAATCCTTCATAGCTTAGAATTTGGCCGTTTTTT

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAAATCCTGATCTTTCCAGAACTTTTATCATGAAT
GGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATCAT
GTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATT
TTCGTATAGTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCA
GGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTT
ATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCA
CTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGCCT
TCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAAAAG
TTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTG
CACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATA
ACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTG
ATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTT
CGTCCAGGTTTTCCAGTTTTGTTGAGTATAGTCTTTTGTAGAAGGATCTG
ATGGTGTTTTGGATT

Query= MSMg01no331_i01.b1 MSMg01no331_i01.b1 CHROMAT_FILE:
MSMg01no331_i01.b1 PHD_FILE: MSMg01no331_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:24 2005
         (608 letters)



>mm_chr2_108282756_108283763
          Length = 1008

 Score = 1116 bits (577), Expect = 0.0
 Identities = 595/601 (99%), Gaps = 2/601 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaagtgaaaccgcttcaaatttacttaagaagttctgcttcttcttgtttta 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaagtgaaacagcttcaaatttacttaagaagttctgcttcttcttgtttta 264

                                                                       
Query: 65  gtgctccttaaactttagaaaacaactcccgggatcaaaattggttgaccaccaatgcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgctccttaaactttagaaaacaactcccgggatcaaaattggttgaccaccaatgcta 324

                                                                       
Query: 125 aaattctgaagtgggccttgctgctttactttggcttctccaggtcccctaaccaggatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaattctgaagtgggccttgctgctttactttggcttctccaggtcccctaaccaggatc 384

                                                                       
Query: 185 cataatgccaagatcaagagtagaaaaagccctcctatgaacagagatacaacactgaat 244
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 cttaatgccaagatcaagagtagaaaaagccctcctatgaacagagatacaacactaaat 444

                                                                       
Query: 245 gacagaagacatgtataatcttttccattcactttagttccaaactacaaactgtactct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gacagaagacatgtataatcttttccattcactttagttccaaactacaaactgtactct 504

                                                                       
Query: 305 gtgggagaaagaaatgaactctaaaaggaaagcaaatgatacagctttcatagacgtgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgggagaaagaaatgaactctaaaaggaaagcaaatgatacagctttcatagacgtgtt 564

                                                                       
Query: 365 ggattacaaaaacaaacaaacacaaaataagttctagtgaaaaatatgttttctagctat 424
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggattacaaaaataaacaaacacaaaataagttctagtgaaaaatatgttttctagctat 624

                                                                       
Query: 425 ataatagtcactcatgttaattcatgattaagaaagtaaagaagctagatagcataaact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ataatagtcactcatgttaattcatgattaagaaagtaaagaagctagatagcataaact 684

                                                                       
Query: 485 gggccaagaacctggaaatccaacagcaaaaatacatttgttttcctttttcaaaatagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggccaagaacctggaaatccaacagcaaaaatacatttgttttcctttttcaaaatagt 744

                                                                       
Query: 545 cttctattttattttttgctngtt-gtctccttcaaagctcaatggctgtcttgagaaat 603
           |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 745 cttctattttattttttgct-gtttgtctccttcaaagctcaatggctgtcttgagaaat 803

            
Query: 604 c 604
           |
Sbjct: 804 c 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)