BAC Information

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BAC

Clone NameMSMg01-332E14
Chromosome2 (Build37)
Map Location 116,133,029 - 116,133,523
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
Downstream geneLOC433464, Tmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332E14.T7 (MSMg01no332_e14.b1)MSMg01-332E14.TJ (MSMg01no332_e14.g1)
ACCAG448359AG448360
length1,3041,293
length of high quality
(start - end)
493 (177 - 669)300 (497 - 796)
definitionCHROMAT_FILE: MSMg01no332_e14.b1 PHD_FILE: MSMg01no332_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:34 2005CHROMAT_FILE: MSMg01no332_e14.g1 PHD_FILE: MSMg01no332_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCGCCACCCATTGGGNNCCATTGGCGCTAAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCTGTAAGTAAAAAAGCCTCAACAACGACCCCTGGNAAGN
GNNATAAGATAAAANNTGACCTTAAATGATTTANTGANANTGAAGTGAGT
TTGTGGAANNAATATATANAAAGAANAGAAAGGNTGTTCTAACTTCACAC
TGAGCCTGCTAGTGTCGAAAGCCTAAGCACAGAATCTTTTTAATTAGGTA
ATTGTCTTAGAAATTAAACATGTGTGAACATAAACAACAAAGCCTTCCAT
TTCTCTACTCTTCATTGTTTCTTCTTTCAAAGATGAATTTTGCAGGTCAA
GTGCATCTTACATTCTTGCACATCTTTTTTTTTTTTTCAACATTCAAATA
TTCTTTTCTGCCACGACCACAATAACATTCTGTCTAATGTTTCTGAAATA
GGTCACGCTGACCTCTCAGTTTGTGGATGTCTTAAATCAAGGCTGCACTT
TATATATTTAGAGACACATTTACTTGTGGAGAGGAAACATTTCTTCATTT
TTTTCTTCCTCCCACCAGCTATGGAATTGAAGGGGCACTTTCTTTTTTCC
CCTCTTCTCAATACTTTTAATAGAAACAGAAAAAATATTTGTGTGTGAGT
GTGTGTGTGTGAAAAGTTTGGTATTAACAGTGGTAAAAGTGGTAAAAATG
TATTTCAAGATGATGTTGTAAGTGATTTTTTAAAATTTGTTTTTATTTTA
TTTTACATGAATGAGAAATTTGCATGTCTGTCTACCTGTCTGTGGGCCAT
ATACATGCCTGGNACTTGGAGGCTGAAATAGGGTTCAGATCCCTTGGAAT
CTGAGCCACTATGTTGGGGCTAGAAACAAACTCAAGTCCTCTTAAAGGGA
AGGTAGCCTCTTAATTCCCTACCAAATCATTGGTGGGGTGGGGGGTAAAA
TTTTCTTGAAACAGAAGTTCTGTGTTAACTGGTTGTCCGGAAATCACCTG
TGGGAAGGGTACTTCAATCAAAAATGGCGGCGGCCCCGACTCCTAAGGTG
GGGTAAAAGGGGGGCTAACCCACCGTCCAAAATTTTAAATAAAAAAAATT
TTTTTTAGAATTATTTGAAAAGGGTTTATAATTTGGGTGCCCTCCCCCAA
TTACCAAGGCTGGGCCCCCCCAAGGAGTTTTTACTTTTTTACCCCCACCC
CCCCCTCCAAATTGCCAATTTAAAATAAAAGAGTGATTTAAATNCGNTAT
GCGGACCCAAAAAACACTCTCTAACCACAAAACAANGANANNNNATCATA
AACA
NCCAACTTTTTTNNAACGCATGTGAGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAAGCCCTTGNGNGNNG
GGANANAGGCAAGGGGCCCTTTAAAACCACNNGGANAAANCAGGGGAAAG
NCAGGNGNAGCANANANNNNNCAAAACCNACNNNNAANAAGCGGACNNAA
AGGCNNNAACCNCCCNNCNAGNCCAACACCCACCAGAGGNACGGGAAAGG
CAAAGNNAANAGGGCAAAGGAAGAAGGGGACCGGGNNAGAAAGAGNNCNN
NGAGGCAAANACAACCNACCNGGNCAGGANGNCAGCAANNCAGNCCACAG
GAANGGGCAGGCNGGCAACCCACGGGCNAACACCANNCACAAGNCAGCAA
GGACAGNNGGATTTTGAAGAAACCNCGAGGCTCGGNCAANCTGGGCGAGN
CCAACAAGAAGCTGCTAGAACACCACCAGAAGNNCNTCAGNAGGNNTCTC
TCCATAAAGTCATGACAAGCAAGGACCAGAAAAGAGTGATGTGGCAACCC
AATACCATACAGCAATGTCCACTGTCTCTTGGTTTATATTTATACCCTTT
ACAAACATTATGTTTTTCTCGAGTGTCTGCTCTAACAAAACATCACATTT
GCCTTTTTCAGGCTGCTTTCAGAAAAGCATCATGTATCTGCTCTCAGCAA
AACGTCCTCCCATGTATCTGCTTCAGCAAAAAGATCTTTCATAAAACAGT
GTCTTAGTCAGGGTTTCTATTCCTGCACAAATATCATGACCAAGAAGCAA
GTTGGGGAGGAAAGGGTTTATTTGGCTTACACTTCCATACTGCTGTTCAT
CCCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGGAGCAGGAGCTG
ATGCAGAGGCCATAGAGGGATGTTCTTTACTGGCTTGCCTCTCTTGGTTT
GCTCAACCTGCTTTCTTATAAAACCAGACTACCGCCCACAGATGGCACCA
CCCACAGGGGGCTTTCCCCCTTGGACCCTAATGAAAAAAGCCCTACCTTG
GGATCTCTGGGAGGATTTCCCCCACGGAACTCCTTTCCTTGGGTACTCTC
AGCTGGGCAGGTGACCAAAATTTATCGGACCAAGGTTTCCCAAAATCCCT
TGAAGAATGGATCCCCTAAAACCCAAAATTCCTCTTTATCTGAAAGGTTT
TTTTACCGCCACAAAAACGAATTTTTTTAACTACGCGGGGAGAAAACCGC
GTACACCAAAACAAACTTCTTCTTCCTCGGGATTAAATAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_e14.b1 MSMg01no332_e14.b1 CHROMAT_FILE:
MSMg01no332_e14.b1 PHD_FILE: MSMg01no332_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:34 2005
         (493 letters)



>mm_chr2_116132829_116133723
          Length = 895

 Score =  901 bits (466), Expect = 0.0
 Identities = 487/495 (98%), Gaps = 2/495 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaggntgttctaacttcacactgagcctgctagtgtcgaaagcctaagcacagaatc 60
           ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 201 agaaaggctgttctaacttcatactgagcctgctagtgtccaaagcctaagcacagaatc 260

                                                                       
Query: 61  tttttaattaggtaattgtcttagaaattaaacatgtgtgaacataaacaacaaagcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttaattaggtaattgtcttagaaattaaacatgtgtgaacataaacaacaaagcctt 320

                                                                       
Query: 121 ccatttctctactcttcattgtttcttctttcaaagatgaattttgcaggtcaagtgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatttctctactcttcattgtttcttctttcaaagatgaattttgcaggtcaagtgcat 380

                                                                       
Query: 181 cttacattcttgcacatctttttttttttttcaacattcaaatattcttttctgccacga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttacattcttgcacatctttttttttttttcaacattcaaatattcttttctgccacga 440

                                                                       
Query: 241 ccacaataacattctgtctaatgtttctgaaataggtcacgctgacctctcagtttgtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacaataacattctgtctaatgtttctgaaataggtcacgctgacctctcagtttgtgg 500

                                                                       
Query: 301 atgtcttaaatcaaggctgcactttatatatttagagacacatttacttgtggagaggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtcttaaatcaaggctgcactttatatatttagagacacatttacttgtggagaggaa 560

                                                                       
Query: 361 acatttcttcatttttttcttcctcccaccagctatggaattgaaggggcactttctttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 acatttcttcatttttttcttcctcccaccagctatggaattgaaggtgcactttctttt 620

                                                                       
Query: 421 ttcccctcttctcaatacttttaatagaaacagaaaaaatatttgtgtgtgagtgtgtgt 480
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 621 ttcccctcttctcaatacttttaatagaaacagaagaagtatttgtgtgtgagtgtgtgt 680

                          
Query: 481 gtgtg--aaaagttt 493
           |||||  ||||||||
Sbjct: 681 gtgtgtgaaaagttt 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 895
Length adjustment: 10
Effective length of query: 483
Effective length of database: 885
Effective search space:   427455
Effective search space used:   427455
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)