BAC Information

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BAC

Clone NameMSMg01-332G16
Chromosome2 (Build37)
Map Location 7,082,301 - 7,082,790
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
Downstream geneLOC100040648, LOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332G16.T7 (MSMg01no332_g16.b1)MSMg01-332G16.TJ (MSMg01no332_g16.g1)
ACCAG448456AG448457
length1,2941,298
length of high quality
(start - end)		565 (131 - 695)68 (159 - 226)
definitionCHROMAT_FILE: MSMg01no332_g16.b1 PHD_FILE: MSMg01no332_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:50 2005CHROMAT_FILE: MSMg01no332_g16.g1 PHD_FILE: MSMg01no332_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCCGACCATTGGNNNACATTCGCGNTAAGACTCCANAGGGAGAGGAT
CCGCGGAATTCCATATTCACTTGGTGCCTTCATGGCCCGTCAGCTACCAT
CTCTGCTCAGCTTTTCCCTTAAATCTGCCGATCTGACCTCTAGTCCTAAC
AGGTGAGTGTCAAGTATTGTCACCACTGAGCCACCTCCCAGCCCTACTTC
AATTTTTCAAGTGTTTTGTTAGAGAGTATTATGGGATCTGGATGACAGAA
AGAATGAGCCTTGAAGTTCAAGTTCTGGAAGCCGTTGCCAATTGAAGAGC
TATCAGAAATAAAAATAAAACATCTCTGAGATCACTAAGCGAGTCAATAG
TGAGTCGGTTAACATTTTCAGAACTTTGTGGGTCATTTTAAAGACTGAAA
CCATGGGATATTGGCAGGTAATGTAGTCCATCAAGAGGCATGAAGGGAAG
GAAACAGATTGTTAGCTTTTCATGAAGGGAAGGAATGGACTGCTAGCTTT
CCAGCAGCTGGGGTAGGGGAGGAGAGATCATGCAGTTCTGATGTGGGGCG
ATGCTCAGGGGGTGAAAGCACTCTGCCCATTACCTGAGTTATGGTGCCCT
GAAGGAATATAGAAACACGTTCACAGTAGGACAGGTGTCTGTAATCTTTA
GCACCCCTGACTGGGAAAATGGAATGCAGACAAAAGACACAGAAGCCTTC
AAGCCATCTAGCAAGACTTCTCTAGCCACCAAGAAATATACTCATCAGCA
CATACAAATATCACACACCATACAGTGCCTGAAAATACCTTGCTTAAGTT
TCATTGTTCTATGACTTTATAATTGAAAAAAATCATGGACATATTTCTTT
TGGTCAACCTGTCAGAAGACATGGCCTGTTCAAACGGTATAAATGATTGT
AGTGCTGCCTGGTGAACCAAAGTGACCTGGTGCACTGTCCTGAATCTCTT
AATTAAATTAAGTTTGCTCCTGTGGTGGCCCCACCCATTTTCCCTCTGTA
CAGGGGAGAAAAAAACTCCTCTTTTTACTTATTTCTTCCAAGGAAATGGG
ACCTCCGGCTCTGAAAACCCATGAAAAGACACCTATTTGTTTTCCCCGGC
CCAAAAATGGGGTTAAAACGGGCCCGGATTAAACTTTAAAAAATGGCCGA
AAAGGAAAGGGGGCCCCAAAAATAAAAGTTTATTTTTTGGGAAAAAAATA
AAAACCCCCTGGGGGGGCGTGTCTGTATTTCCGTTTAAAAAAAAAATTTC
CTTTCCTAATATTTTGGAAAACAAAGAAACAAAATTCAGGTTTA

CCCACACATTNNNAAAAGATGCGAGCCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAGGGGCCCCTGATGTAGNNN
AGNANTTGTNNNANATGCCCTAAAAACCACCCCCNAGGNCNNGNNCACNN
GAGCAGGGACACACGGGGGCACACACACACACACACACACACACACACAC
ACACCACCCCNNGGAAGCAGCAGNGGCNAAANCGGGGGGNCNCAGNNNCN
NGGNCCAGGAGAGAGAGGANGNCAGCACCAGGGGNACGGANAAAGGGAAC
AGAANANGAAGGGNCACNCANGGAAAAGGGCCACAGGGNNAAAAANCCAN
CAAACCACCANCGGGAAGAAAAAGGACNACGAGNNNAGGAAAGAAAANCN
CNNAAACGAAGCTTTTTAAGGCANGGAAANGAAACGGAGAGAGAAGAAAN
NCACCAAAAACCCAAAAGGAAAACAAACACAAACAAACAAACAAACAAAC
CCAAACAGAAACCAGCNAAAAGGGAAAAANAANNCAAGACACNAAAAAGG
AAAAANAACNACAAGGNANAGGAAAGNACNCCCAGGCNGAAAGNCAGGNA
AAAAAGAGAGAAGAAAANAAAANAANAAAAAACGNAAANACAAAAACAAA
ACAAAAAAAAAAACCAACAGAAAGANANNNCCAAAGAAGGAGCNAGAAAG
GAAAACAANCAGAGCAAAACAAGCAGCAACGGGGCGGCAACCNCGGCCAC
CCCGCNCGGCNCCCCAAGGAGGAGGACCCNNCCCCCANAGGCAGGAAACG
AACCCACACCCCGAAAAAGCAAAGGCAAGNACCACGGGGGCACANNNNAA
AAAGAACAGGNGAAAGGGAAANNNCCGCCAANNNNAAGAAAAAAGCCACA
AAAAAAAAGCACAAAANNCCNNAACAAACANNNAAAGGAAAAAAGGAACC
CAAGGGAAAGCCGGAAAAAAAGAAAAAAAAACCCACAAGGAAAAAAACCC
AAACACAAAAACCCAAAGAAAGAACGGGAAAGGAANAAAAACAAGGAAAN
AGGGAAAAAAAAAAAAAAACGGGAAAGNGCCAAAAAAAAAAAAAGGAAGA
AAGGGGAGGAGGGGAAAACCAGGGGCCAAAGAAAGGAGCAAAGAAGACCC
CCAAAGGGGAAAAAAAGGAAAAGGAACGGAAAGGGCCGGGGGGGGAAGAC
CAGGCCAAAAACCACAAGCCCGGGGGGGAAAAAACAGGAGAAAAGGGCCA
AAACCAGGAGGAACCAAGGAAAGGGGGGGAAAAAACGCGCAAAGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_g16.b1 MSMg01no332_g16.b1 CHROMAT_FILE:
MSMg01no332_g16.b1 PHD_FILE: MSMg01no332_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:50 2005
         (565 letters)



>mm_chr2_7081826_7082790
          Length = 965

 Score =  791 bits (409), Expect = 0.0
 Identities = 466/491 (94%), Gaps = 12/491 (2%)
 Strand = Plus / Minus

                                                                       
Query: 86  ttgttagagagtattatgggatctggatgacagaaagaatgagccttgaagttcaagttc 145
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 965 ttgttagagagtattatgggatctggatgacagaaagaatgagctttgaagttcaagttc 906

                                                                       
Query: 146 tggaagccgttgccaattgaagagctatcagaaataaaaataaaacatctctgagatcac 205
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 905 tggaagccgttgccaattgaagagctatcagaaataaaaataaaacgtctctgagatcac 846

                                                                       
Query: 206 taagcgagtcaatagtgagtcggttaacattttcagaactttgtgggtcattttaaagac 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 taagcgagtcaatagtgagtcggttaacattttcagaactttgtgggtcattttaaagac 786

                                                                       
Query: 266 tgaaaccatg----------ggatattggcaggtaatgtagtccatcaagaggcatgaag 315
           ||||||||||          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tgaaaccatgatatagagcaggatattggcaggtaatgtagtccatcaagaggcatgaag 726

                                                                       
Query: 316 ggaaggaaacagattgttagcttttcatgaagggaaggaatggactgctagctttccagc 375
           |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ggaagggaatggattgttagcttttcatgaagggaaggaatggactgctagctttccagc 666

                                                                       
Query: 376 agctggggtagggg-aggagagatcatgcagttctgatgtggggcgatgctcagggggtg 434
           ||||||||| |||| ||||||||||||||| |||||| ||||| | ||||||||||||||
Sbjct: 665 agctggggtggggggaggagagatcatgcaattctgaggtgggacaatgctcagggggtg 606

                                                                       
Query: 435 aaagcactctgcccattacctgagttatggtgccctgaaggaatatagaaacacgttcac 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct: 605 aaagcactctgcccattacctgagttatggtgccctgaaggaatatagaaataggt-cac 547

                                                                       
Query: 495 agtaggacaggtgtctgtaatctttagcacccctgactgggaaaatggaatgcagacaaa 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 546 agtaggacaggtgtctgtaatctttagcacccctgactgggaaaatggaatgcagtcaaa 487

                      
Query: 555 agacacagaag 565
           |||||||||||
Sbjct: 486 agacacagaag 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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