BAC Information

Click to search

BAC

Clone NameMSMg01-332K08
Chromosome2 (Build37)
Map Location 18,075,626 - 18,076,371
singlet/doubletsinglet
Overlap geneMllt10
Upstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik
Downstream geneLOC641254, Dnajc1, LOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332K08.T7 (MSMg01no332_k08.b1)MSMg01-332K08.TJ (MSMg01no332_k08.g1)
ACCAG448622AG448623
length1,3261,302
length of high quality
(start - end)
561 (143 - 703)744 (129 - 872)
definitionCHROMAT_FILE: MSMg01no332_k08.b1 PHD_FILE: MSMg01no332_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:19 2005CHROMAT_FILE: MSMg01no332_k08.g1 PHD_FILE: MSMg01no332_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCGGTCTCGNNNNCCATTGGGCGCTAAGACTCCTTAGGGAGAGGAT
CCGCGGAATTCCTGACGCGGGTAAAATCTACATAGCCTTGNNNNNAAAGN
TTGGGGANTAAGAATCTCCTGAAAACTGCGGNCGANCCGGGGACCCGGNT
CTCTTTGACCCGCCAGGTCCTCAATGTAGGACCCCGCGTCCCCATTGGGC
CTAATCCCGTGATCACTGACCAGCTACCCCCATCCCAACCCGTGCAGATC
ATGCTCCCCAGGCCTCCTCATCCTCCTCCTTCAGGCACGGTCTCTATGGT
ACCTGGGGCTCCCCCGCCTTCTCAACAGCCTGGGACGGGAGACAGGCTGC
TAAATCTGGTAGACGGAGCCTACCAAGCACTCAACCTCACCAGTCCTGAC
AAAACCCAAGAGTGCTGGTTGTGTCTGGTATCGGGACCCCCCTACTACGA
AGGGGTTGCCGTCCTAGGTACCTACTCCAACCATACCTCTGCCCCAGCTA
ACTGTTCCGTGGCCTCCCAACACAAGCTGACCCTGTCCGAAGTGACCGGA
CAGGGACTCTGCGTAGGAGCAGTTCCCAAAACCCATCAGGCCCTGTGTAA
TACCACCCAGAAGACGAGCGACGGGTCCTACTATCTGGCTGCTCCCGCCG
GGACCATCTGGGCTTGCAACACCGGGCTCACTCCCTGCCTATCTACTACT
GTACTCAACCTCACCACCGATTACTGTGTCCTGGTTGAGCTCTGGCCAAA
GGTGACCTACCACTCCCCTGGNTATGTTTATGGNCAGTTTGAGAGAAAAA
CCCAATATAAAAGAGAGCCGGTGTCATTAACTCTGGCCCTGCTGTTGGGA
GGACTTACTATGGGCGGCATAGCTGTCGGAGTAGGAACAGGGACTACAGC
CCTATTGGCCACCAACAATTCTAAAAGATCCGGGGGGCCTACATACAGAA
CTTTGGGGCTTAAAAAATCAGACAGTGGCCTAAAAAAACTCTGAACCCTT
GGCTGGAGGGGGCCTCCAAACCGGAAGGGATAAATTGCTGTCCTTTAAAA
AGAGATTATTTGTGGCTTAAAAAAAAGGGGTTTTCTCCCAACACTGCGCC
GAGGGGAAAACTGGGNAACCTAAAAAAAGTAACACAAAAAAATTTTCATT
GACAGGGGGTGGGGAGTGTATAGGCCCCGNCCCACCTGACCCCTATGGCC
TGGAAATTTATTCTCCCCCCCGTTTCCCCTGCCTGAAAAAATAGGGGGCG
GGTGCCCGCCCCCCCTCCAAAGGGCGAATTCTTAAGAAAACCAACGCGCT
CGAACTAAAAGAANNNANATCGGGGT
CCCGTCTTTTNNNAAAGAGGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAAAAGGCCTGCAAATATTGA
CCTATTGTGATTTAAACCTTTTTAATAATTAAGAATATATTTTATGCAGG
GCATCTTTAATCCCAGGACTCCAGAGGCAGAGGCAGGCAGATCTCTAGAT
GTTCAAGACCGGCATGAGTTCCAGGACAGCCAGGGCTTTAGAGAAACCCT
GTCTCGAAAAACAAAAACCAAAAAAAATAAAAAATAAAATAAAAACCATG
CTGGTACCCTACTGTTGCACAAGGAAGGCTCTGTCATCAACAGTGGCAAG
GAGACAAAAGAAACACAGCCATTCTGAGGAGGTGCCAAATATTGGTCAAA
AACTTAAAGATTTTTCCCTCGATAACCAGGAGAGCCAGGTACAGAAACTA
TCTTGAGTCAGAAACAAGAGTGGAGAAAGACTGGGTCTACATACTTAGTT
CCACAATAGCCAGAGCTATGTAAACAGCCTCACTCTGACCTCTACATACA
GTATGCAATGTAATATAATGCAATACAACACACACACACACACTCTTATG
GTGAAAAAAAATAATATAAAAGCCACAGACAGAAATGGATGCACACATGT
TATATAACTACTCCTGGCCACATGCCATTATTGTGGTTTTGTTTTTGTTT
TTCTAAAAATATGCCCTTCACCAGCATGTCTGTTGCTGGCCTGCCTACTT
CTCTGCAGCCTGTTTGATGGTCTGTGTGTATACCTTTATGTCCACCTATG
TTCAGCCCAGAGTTGCATACCAGAGGTTGACTTTCTGAAATTACATTTTA
CCTGCCCCTCCCATTACCCCAAGCCTCCCAGATGCTCCTCTTTTCCAGAC
TGTCCAGTTTAGACTTCCCAGCCGTACAAGCATGATGTCCTTAGGGGAAC
GGACTATATGACTACATGATCCTAGCTTTGTGAATACAAAGACCCACGGT
CCCCCTGACTTCCTGCCAATAAAATTTGCTGAATCGTGAGTTCCAGGTCA
GGGAGAATCCTGGGTGAATCCAGGCCTTAATTTTCTCTAACCAAGGGAAA
GCTTACCAACGGAAGATTTCCCTCTTCTTGTGTCCAAAAGGGAAATCCCA
CCCAAAAAGCCATCCAAAAAAAACCTTCCTCGAAGAAACTGGAAAGGTCA
GACTTTAACAAAAGGGGGATGTTTATGTGGGCTTTTTAAGGTATACTCCC
AAAGCCCCCTGCCAAAAACAAATATTTATTATTCCTCTAAATTTTACGGC
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_k08.g1 MSMg01no332_k08.g1 CHROMAT_FILE:
MSMg01no332_k08.g1 PHD_FILE: MSMg01no332_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:19 2005
         (744 letters)



>mm_chr2_18075400_18076540
          Length = 1141

 Score = 1295 bits (670), Expect = 0.0
 Identities = 726/756 (96%), Gaps = 22/756 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaagaatatattttatgcagggcatctttaatcccaggactccagaggcagaggcaggc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 972 ttaagaatatattttatgcagggcatctttaatcccaggactctagaggcagaggcaggc 913

                                                                       
Query: 61  agatctctagatgttcaagaccggcatgagttccaggacagccagggctttagagaaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 agatctctagatgttcaagaccggcatgagttccaggacagccagggctttagagaaacc 853

                                                                       
Query: 121 ctgtctcgaaaaacaaaaaccaaaaaaaataaaaaataaaataaaaaccatgctggtacc 180
           |||||||||     |||||  ||||||||| |||||||||||||||||||||||||||||
Sbjct: 852 ctgtctcga-----aaaaa--aaaaaaaattaaaaataaaataaaaaccatgctggtacc 800

                                                                       
Query: 181 ctactgttgcacaaggaaggctctgtcatcaacagtggcaaggagacaaaagaaacacag 240
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 799 ctactgttgcacaaagaaggctctgtcatcaacagtggcaaggagacaaaagaaacgcag 740

                                                                       
Query: 241 ccattctgaggaggtgccaaatattggtcaaaaacttaaagatttttccctcgataacca 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 739 ccattctgaggaggtgccaaatattggtcaaaaacttatagatttttccctcgataacca 680

                                                                       
Query: 301 ggagagccaggtacagaaactatcttgagtcagaaacaagagtggagaaagactgggtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggagagccaggtacagaaactatcttgagtcagaaacaagagtggagaaagactgggtct 620

                                                                       
Query: 361 acatacttagttccacaatagccagagctatgtaaacagcctcactctgacctctacata 420
           ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 619 acatacttagttccacaatagccagagctatgtaatcagccccactctgacctctacata 560

                                                                       
Query: 421 cagtatgcaatgtaatataatgcaatacaacacacacacacacactcttatggtgaaaaa 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 559 cagtatgcaatgtaatataatgcaatacagcacacacacacacactcttatggtg-aaaa 501

                                                                       
Query: 481 aaataatataaaagccacagacagaaatggatgcacacatgttatataactactcctggc 540
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 500 aaataatataaaagccacagacagaaatggatgcacac--gttatataactactcctggc 443

                                                                       
Query: 541 cacatgccattattgtggttttgtttttgtttttctaaaaatatgcccttcaccagcatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cacatgccattattgtggttttgtttttgtttttctaaaaatatgcccttcaccagcatg 383

                                                                       
Query: 601 tctgttgctggc------------ctgcctacttctctgcagcctgtttgatggtctgtg 648
           ||||||||||||            ||||||||||||||||||||||||||||||||||||
Sbjct: 382 tctgttgctggcctgtaggtcgttctgcctacttctctgcagcctgtttgatggtctgtg 323

                                                                       
Query: 649 tgtatacctttatgtccacctatgttcagcccagagttgcataccagaggttgactttct 708
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgtatacctttatgtccacctatgttcagcccagagttgcataccagaggttgactttct 263

                                               
Query: 709 gaaattacattttacctgcccctcccattaccccaa 744
           ||||||||||||||||||||||||||||||||||||
Sbjct: 262 gaaattacattttacctgcccctcccattaccccaa 227


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 744
Length of database: 1141
Length adjustment: 10
Effective length of query: 734
Effective length of database: 1131
Effective search space:   830154
Effective search space used:   830154
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)