Query= MSMg01no332_l10.b1 MSMg01no332_l10.b1 CHROMAT_FILE:
MSMg01no332_l10.b1 PHD_FILE: MSMg01no332_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:27 2005
(496 letters)
>mm_chr2_17830758_17831653
Length = 896
Score = 806 bits (417), Expect = 0.0
Identities = 467/487 (95%), Gaps = 6/487 (1%)
Strand = Plus / Plus
Query: 1 gagactccatatcctaactgaaaggttggtctctggtgctagcactttctactcaaccaa 60
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 gagattccatatcctaactgaaagtttggtctctggtgctagcactttctactcaaccaa 260
Query: 61 gctgtgcaaggtttaaaccttaccacgtggtgtggtggtgtgctggggggc------ggg 114
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gctgtgcaaggtttaaaccttaccacgtggtgtggtggtgtgctggggggcggggggggg 320
Query: 115 gggaggtattgtaacattcagcaagcattcagtgagatgctcagcaggaaaggtgcctgt 174
||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 321 ggggggtattgtaacattcagcaagcattcagtgagacgctcagcaggaaaggcgcctgt 380
Query: 175 cctgtgagcctgagtttgattccccagaacctacataaaagtggaaggagagaacagatc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtgagcctgagtttgattccccagaacctacataaaagtggaaggagagaacagatc 440
Query: 235 cccacacgggacctgtgagatgattcagtgagtaaaggctcttgtcaccaaccctgatcc 294
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 cccacacgggacctgtgagatgattcagtgagtaaaggctcttgccaccaaccctgatcc 500
Query: 295 ccagagccctcgtgaggaaaggagaggactgtctccaaactgttgtgctctgacctccac 354
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccggagccctcgtgaggaaaggagaggactgtctccaaactgttgtgctctgacctccac 560
Query: 355 agcactttgcacaagctcagctactcaagcgcgcgcacagagagagacagagagagagag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcactttgcacaagctcagctactcaagcgcgcgcacagagagagacagagagagagag 620
Query: 415 agagagagagagagagagagagagagagagagagagagagagagagagagagagagagag 474
||| ||||||| ||||| ||||| ||||||||||||| ||||||||| ||||| ||||||
Sbjct: 621 agacagagagacagagacagagacagagagagagagacagagagagacagagacagagag 680
Query: 475 agagaga 481
|||||||
Sbjct: 681 agagaga 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_l10.g1 MSMg01no332_l10.g1 CHROMAT_FILE:
MSMg01no332_l10.g1 PHD_FILE: MSMg01no332_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:27 2005
(685 letters)
>mm_chr2_17974485_17975569
Length = 1085
Score = 1093 bits (565), Expect = 0.0
Identities = 580/585 (99%)
Strand = Plus / Minus
Query: 1 cagggggcaaaaaaagggtagaaggtcaccgtattctgattatgggtcaatagacaacat 60
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 585 cagggggcaaaaaaagggtagaaggtcactgcattctgattatgggtcaatagacaacat 526
Query: 61 ggcatatactctgtgtcccaaagttctgttaaagacgggattttttttaaacgtctaaga 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 525 ggcatatactctgtgtcccaaagttctgttaaagacaggattttttttaaacgtctaaga 466
Query: 121 acagaaggatgggcctattggaagacttgccctgatatatttgaatgagattttttaaaa 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 acagaaggatggacctattggaagacttgccctgatatatttgaatgagattttttaaaa 406
Query: 181 aagaagaaaaaggagtttaaagaaaatatgctaagttatagtttattcctcattttagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aagaagaaaaaggagtttaaagaaaatatgctaagttatagtttattcctcattttagct 346
Query: 241 aattattcttctcctcttaccattttcacctccaaaaaaggagagaagacagtatgtcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aattattcttctcctcttaccattttcacctccaaaaaaggagagaagacagtatgtcag 286
Query: 301 aaaagtttagctaaagagctgtttagtctgttttgtcctaactcttcaacctattcagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaaagtttagctaaagagctgtttagtctgttttgtcctaactcttcaacctattcagcc 226
Query: 361 atatgagactattattttaaacttatattattattatcattattattagactttagttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 atatgagactattattttaaacttatattattattatcattattattagactttagttaa 166
Query: 421 cagtttaagagatgtctcttattcttctaaccagtgtgcctacattgttgggccctttgt 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 165 cagtttaagagatgtctcttattcttctaaccactgtgcctacattgttgggccctttgt 106
Query: 481 gatattcctccctcttttctgtctgaattcactttgaacaaaatgtacccagcaatcact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gatattcctccctcttttctgtctgaattcactttgaacaaaatgtacccagcaatcact 46
Query: 541 aaaacaaatgtatatggtgaagagttagccggtggtggtcgtggt 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 aaaacaaatgtatatggtgaagagttagccggtggtggtcgtggt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
