Query= MSMg01no333_k02.b1 MSMg01no333_k02.b1 CHROMAT_FILE:
MSMg01no333_k02.b1 PHD_FILE: MSMg01no333_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:51 2005
(344 letters)
>mm_chr2_114690297_114691040
Length = 744
Score = 594 bits (307), Expect = e-174
Identities = 316/319 (99%)
Strand = Plus / Minus
Query: 26 actatctatacatgctctgcgtacaccaaaggcatcgatactatctatacatgctctgcg 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 actatctatacatgctctgcgtacaccaaaggcatcgatactatctatacatgctctgcg 376
Query: 86 tacaccaaaggcatcgatactttaggaccttaagaagctagctgtcacctaattgtctgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tacaccaaaggcatcgatactttaggaccttaagaagctagctgtcacctaattgtctgt 316
Query: 146 tttggtcatttagtggagcctctatctgcatttgtagggtttatcagctctatctgtttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tttggtcatttagtggagcctctatctgcatttgtagggtttatcagctctatctgtttg 256
Query: 206 tgagtatagtaagtcataagcaccacaatgtgtcttagttaaggttttgttgtgtgatga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgagtatagtaagtcataagcaccacaatgtgtcttagttaaggttttgttgtgtgatga 196
Query: 266 gactctatgaccatataattgaggctggcttacagtttcagaggtttcatccattactgt 325
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 195 gacactatgaccatataattgaggctggcttacagtttcagaggttttgtccattactgt 136
Query: 326 catggtgagaaaacatggc 344
|||||||||||||||||||
Sbjct: 135 catggtgagaaaacatggc 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 8
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_k02.g1 MSMg01no333_k02.g1 CHROMAT_FILE:
MSMg01no333_k02.g1 PHD_FILE: MSMg01no333_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:51 2005
(497 letters)
>mm_chr2_114534657_114535553
Length = 897
Score = 830 bits (429), Expect = 0.0
Identities = 478/495 (96%), Gaps = 4/495 (0%)
Strand = Plus / Plus
Query: 5 aattctcttagcttctttttgtttttctccttaccagaagaagcacagtagctatatgtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aattctcttagcttctttttgtttttctccttaccagaagaagcacagtagctatatgtg 264
Query: 65 aattaaaaaagatctataaattatatttttggtgaatacctaaaatataattgattattc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattaaaaaagatctataaattatatttttggtgaatacctaaaatataattgattattc 324
Query: 125 agattaatagtaaacattcagaatgatttcaatattgtgaagcagatcatacttttcatc 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 agattaatagtaaacattcagaatgatttcaatattgtaaagcagatcatacttttcatc 384
Query: 185 tttcaacttttggaaaacagattggatggagggatatatcaaagcaaatgcaaaaacatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcaacttttggaaaacagattggatggagggatatatcaaagcaaatgcaaaaacatt 444
Query: 245 ttttaaaaatattttttattatgtattttcctcaattacatttccaatgctatcccaaaa 304
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 445 ttttaaaa-tattttttattatgtattttcctcaattacatttccagtgctatctcaaaa 503
Query: 305 gtcccccataccctccccccaactcccctacccacccattcccactttttggcccccgcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 gtcccccataccctccccccaactcccctacccacccattcccactttttggccctggt- 562
Query: 365 gctcccctgtactggggcgtataaagtttgcaagtccaatgggcctct--ttccagtgat 422
| |||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 563 gttcccctgtactggggcatataaagtttgcatgtccaatgggcctctctttccagtgat 622
Query: 423 ggccgactaggccatcttttgatacatatgcagctagagtcaagagctccggggtactgg 482
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 623 ggccgactaggccatcttttgatacatatgcagctagagtcaagagttccagggtactgg 682
Query: 483 ctagctcataatgtt 497
||| ||||||||||
Sbjct: 683 ttagttcataatgtt 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
