BAC Information

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BAC

Clone NameMSMg01-334D10
Chromosome2 (Build37)
Map Location 53,937,290 - 53,937,707
singlet/doubletsinglet
Overlap geneRprm
Upstream geneFmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933
Downstream geneLOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334D10.T7 (MSMg01no334_d10.b1)MSMg01-334D10.TJ (MSMg01no334_d10.g1)
ACCAG449766
length730742
length of high quality
(start - end)		---418 (79 - 496)
definitionCHROMAT_FILE: MSMg01no334_d10.b1 PHD_FILE: MSMg01no334_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:34 2005CHROMAT_FILE: MSMg01no334_d10.g1 PHD_FILE: MSMg01no334_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

NCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGCTGGGCAACCAGACCGAC
GTGGCTGGCCTGTTCCTGGCCAACAGTAGCGAGGCGCTGGAGCGCGCGGT
GCGCTGCTGCACCCAGGCGTCGGTGGTGACCGACGATGGCTTCGCCGAGG
GAGGCCCCGACGAGCGCAGCCTGTACATCATGCGTGTGGTGCAGATCGCA
GTCATGTGTGTGCTCTCGCTCACTGTGGTTTTTGGCATCTTCTTCCTTGG
CTGCAACCTGCTCATCATGTCCGAAGGCATGATCAACTTCCTAGTGAAGG
ACCGGAGGCCGTCTAAAGAGGTGGAGGCAGTGGTCGTGGGACCCTACTGA
GTGGCCCTCGGGTCCCCCTCGGCGGGTGCCTCCCTTCTGGCACCTCCAGT
ACTCCGCCAGCCGCGATGCACCCCTCACCATCACGGACCGAGCAACGCAA
ACCTGTCGGAGTCAGCTTTTTTCTCTTGACTTCTGTCTTTGGGGAAAAAG
TGACTGATTTCTGATCGTTCTTCGAAAGGCCCCTAGCAAGATTGTACAGG
AGGAGCGCCCATACTTCGGGACACAGCATTTAGGTGGCTCCCGTCGCGCT
GTATAACCTTTGTCACGCGGCCGCTGTTCGTTACCCCCCTGGCAGTTCCA
CCCCCTTTGCCCCATGCCCCCCTTTCCCCCCGCTTGGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_d10.g1 MSMg01no334_d10.g1 CHROMAT_FILE:
MSMg01no334_d10.g1 PHD_FILE: MSMg01no334_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:34 2005
         (418 letters)



>mm_chr2_53937090_53937907
          Length = 818

 Score =  793 bits (410), Expect = 0.0
 Identities = 416/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgctgggcaaccagaccgacgtggctggcctgttcctggccaacagtagcgaggcgct 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 618 agtgctgggcaaccagaccgacgtggctggcctgttcctggtcaacagtagcgaggcgct 559

                                                                       
Query: 61  ggagcgcgcggtgcgctgctgcacccaggcgtcggtggtgaccgacgatggcttcgccga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggagcgcgcggtgcgctgctgcacccaggcgtcggtggtgaccgacgatggcttcgccga 499

                                                                       
Query: 121 gggaggccccgacgagcgcagcctgtacatcatgcgtgtggtgcagatcgcagtcatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gggaggccccgacgagcgcagcctgtacatcatgcgtgtggtgcagatcgcagtcatgtg 439

                                                                       
Query: 181 tgtgctctcgctcactgtggtttttggcatcttcttccttggctgcaacctgctcatcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 438 tgtgctctcgctcactgtggtttttggcatcttcttccttggctgcaacctgctcatcaa 379

                                                                       
Query: 241 gtccgaaggcatgatcaacttcctagtgaaggaccggaggccgtctaaagaggtggaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtccgaaggcatgatcaacttcctagtgaaggaccggaggccgtctaaagaggtggaggc 319

                                                                       
Query: 301 agtggtcgtgggaccctactgagtggccctcgggtccccctcggcgggtgcctcccttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agtggtcgtgggaccctactgagtggccctcgggtccccctcggcgggtgcctcccttct 259

                                                                     
Query: 361 ggcacctccagtactccgccagccgcgatgcacccctcaccatcacggaccgagcaac 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggcacctccagtactccgccagccgcgatgcacccctcaccatcacggaccgagcaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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