Query= MSMg01no334_d19.b1 MSMg01no334_d19.b1 CHROMAT_FILE:
MSMg01no334_d19.b1 PHD_FILE: MSMg01no334_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:36 2005
(492 letters)
>mm_chr2_79391563_79392454
Length = 892
Score = 882 bits (456), Expect = 0.0
Identities = 480/488 (98%)
Strand = Plus / Minus
Query: 5 gaattcaaacttatttaccagaacagctaaatgaagggaaatgtcacagaatcagtgaac 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gaattcaaacttattcaccagaacagctaaatgaagggaaatgtcacagaatcagtgaac 633
Query: 65 cctgaattattactttgtggtttgcaccctagttttgaaacccatctacataacagcacc 124
|||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct: 632 cctgaattattactctgtggttggcaccctggatttgaaacccatctacataacagcacc 573
Query: 125 tctgactatggtacctggtgtataatgatgccttgtgtgtcatcctattgctgttttatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tctgactatggtacctggtgtataatgatgccttgtgtgtcatcctattgctgttttatg 513
Query: 185 tagcatcctctatcaccagtctcaccagtgtccatcctagaagtaaggcagatataattc 244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 512 tagcatcttctatcaccagtctcaccagtgtccatcctagaagtaaggcagatataactc 453
Query: 245 actttgtaacaaacagtcacgtgataaacatatttagttatccatagtagagacttgaca 304
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 actttgtcacaaacagtcacgtgataaacatatttagttatccatagtagagacttgaca 393
Query: 305 ccagtaacttagaagagtgaacaatggcacacaggaatgggtggcaggtatacagttcat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ccagtaacttagaagagtgaacaatggcacacaggaatgggtggcaggtatacagttcat 333
Query: 365 tcgtcattgttctggaagaactgacctcagtggaccttttaaaccttgcagatctgttca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tcgtcattgttctggaagaactgacctcagtggaccttttaaaccttgcagatctgttca 273
Query: 425 tggtagccattatttttaagatgaaagcttaaatcaaatgctgctatgtgtaacaaatca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tggtagccattatttttaagatgaaagcttaaatcaaatgctgctatgtgtaacaaatca 213
Query: 485 ttgaatga 492
||||||||
Sbjct: 212 ttgaatga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_d19.g1 MSMg01no334_d19.g1 CHROMAT_FILE:
MSMg01no334_d19.g1 PHD_FILE: MSMg01no334_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:36 2005
(600 letters)
>mm_chr2_79203154_79204150
Length = 997
Score = 1075 bits (556), Expect = 0.0
Identities = 588/600 (98%), Gaps = 3/600 (0%)
Strand = Plus / Plus
Query: 1 tctggaattgaagttgtaaacaaactgtcagctgccatatgggtgttgggaattgaaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggaattgaagttgtaaacaaactgtcagctgccatatgggtgttgggaattgaaccc 260
Query: 61 agaacctctgaaagaaaaaccagtgctctcaaccacagagccatctctccagctctgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacctctgaaagaaaaaccagtgctctcaaccacagagccatctctccagctctgagc 320
Query: 121 acaacagtcttaacggatattgaagaagttaaaaaataaatcacatttttgcctgaaaaa 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 acaacagtcttaacggatattgaaaaagttaaaaaataaatcacatttttgcctgaaaaa 380
Query: 181 aaaaacatagtaaaaatgtaaaagaaatgactaagaaatccacatgtataaaatgtttta 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaa---atagtaaaaatgtaaaagaaatgactaagaaatccacatgtataaaatgtttta 437
Query: 241 acaaggtgaataaaattaatggcctctagagatatgtaacatgttcagtgaaaaatatga 300
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 438 acaaggtgaataaaaataatggcctctagagatatgtaacatattcagtgaaaaatatga 497
Query: 301 tgaaatagtaaaaggtgatcataaagaaaaggataaactgtggtttatataagtatgtga 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 498 tgaaatagtaaaaggtgatcataaagaaaagggtaaactgtggtttatataagtatgtga 557
Query: 361 agtagggagaatcaaaataaacaagactggctgttaggggccctagaatctgacagagcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agtagggagaatcaaaataaacaagactggctgttaggggccctagaatctgacagagcc 617
Query: 421 tcggtcatcccttcacaaaaaatcatggagagagatgctgaacagtttctttaactatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcggtcatcccttcacaaaaaatcatggagagagatgctgaacagtttctttaactatga 677
Query: 481 tactgttttcttatcctaaagtatccatatacgagagatttaagagtctataatttcctg 540
|||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 678 tactgttttcatatcctaaggtatccatatatgagagatttaagagtctataatttcctg 737
Query: 541 ttcttttatttcagtgctcttccacttcagcataaatgttatgagcttagggaactaagt 600
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 738 ttcttttatttcagtgctctttcacttcagcataaatgttatgatcttagggaactaagt 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 997
Length adjustment: 10
Effective length of query: 590
Effective length of database: 987
Effective search space: 582330
Effective search space used: 582330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
