BAC Information

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BAC

Clone NameMSMg01-334F21
Chromosome2 (Build37)
Map Location 84,553,972 - 84,691,772
singlet/doubletdoublet
Overlap geneZdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1
Upstream geneItgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19
Downstream geneRtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334F21.T7 (MSMg01no334_f21.b1)MSMg01-334F21.TJ (MSMg01no334_f21.g1)
ACCAG449881AG449882
length725725
length of high quality
(start - end)		599 (75 - 673)219 (332 - 550)
definitionCHROMAT_FILE: MSMg01no334_f21.b1 PHD_FILE: MSMg01no334_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:46 2005CHROMAT_FILE: MSMg01no334_f21.g1 PHD_FILE: MSMg01no334_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,553,972 - 84,554,570)(84,691,554 - 84,691,772)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGCGG
AATTCCAGGGCAGCTACCGTTATGTACAGAGATCCTGTCTCAAAACAACA
ACAAACAATTCAAGATGTGTAGTTTGAAGACTTTCATAAGGTTTGATATA
AGTAGTTCCTTTGGAGCAGTGCAGTGGACAGCACATGTATTATTTGTTAA
AATAACCAAACCTTATAGCACAGAACACTAAATTTGAATATATAGAAATG
GAGATGTCATATAGAAGAATGAATACATGCTATGAAGGAAAGATCCAAGA
AGAAGTTTAAAAAGAGTATTATTACATATCGACGTAGGTGCCCAAGTACC
TGGCGATAGAATTCTTACAAACACTAGATGAATTTGTATGCATTCATGAG
CACCGGACAGATCTGTCTGATACAAAGCAGGCTCACACTGGGATAAAAGG
ATGGAGATCTAACCTAAGATTATCCTGGACAAGATGGCATTAACCAGGAA
GTAAACCCAAGAGGACAAAAATGGTCTGCAATGTAACATGTATCTATTCT
ACGACTACTTCTAATAACTTTAGTCACTTTCTTGTTTCTCGTTTTAGTGG
TTTCATTTGGCCAACTGGTTAAGGAACTTTAAACTTCCCCAGGAATAGAC
GGCTAGTGATAAAATACTGTCAGATACATTCAAGCCCTACTTGTAAAATA
AAGTACAAAGTACTATTAGCATAAN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTGCCAAAAATCATTCATCATCTGTTCTGCTCAGTGAA
CCAGGCCCTCCGGAAAAGAGATGGCCAAGTCCTCCGTTCATCCCACTCTC
TTCCAGTGTTAGATGCCACACGGAGACTAAAAACTCTCCACCAGAACAGA
GGCTCAGTCGAAAGACCTCAAATAAAGATGAGGAGTAATGCATTTAAACA
GAGAAAGAAGCTGTCGCTGACCCCCAAGAGAACTGTCAGGGAGACAAAAT
AGGCTCCCATTAAAACAAGGTTTCTCTGTTGCCCTCTATCTGTTACGTAC
ACTGTCAAGGACACCAGGAAATGATCCCTTTACCGAAAGGGTCGAAGAGG
CTCTGTCTAAGCCTGGCACTAGCGAGAGCTAACCACAGGGTGACCCTGGA
GGTAGCATACTGGCAGTAGTTAGAGCCCACGGGCAGTCTGCAACAGCAAA
AGGCTCTTGGTTAGGCTTGTCAGCGGGGGGCAGGGCCAACAAGTGGTGGG
GCGGGGCGGNGCCGGCGTCAGGCCCCACCATTGGCTGGATATTACCAAGG
CGTTGACCGCTGATGAGCACACTCTGTCTGGTCCTCCAACCCCTCTACGA
CCCCGGTTTTGTTCTTTGTCAAGCCTCCTTGTCCAGTCCCAGAAGAGATT
TATAGACCTGAGCCCATGTGCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_f21.b1 MSMg01no334_f21.b1 CHROMAT_FILE:
MSMg01no334_f21.b1 PHD_FILE: MSMg01no334_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:46 2005
         (599 letters)



>mm_chr2_84553772_84554770
          Length = 999

 Score = 1151 bits (595), Expect = 0.0
 Identities = 598/599 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacagagatcctgtctcaaaacaacaacaaacaattcaagatgtgtagtttgaagacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacagagatcctgtctcaaaacaacaacaaacaattcaagatgtgtagtttgaagacttt 260

                                                                       
Query: 61  cataaggtttgatataagtagttcctttggagcagtgcagtggacagcacatgtattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataaggtttgatataagtagttcctttggagcagtgcagtggacagcacatgtattatt 320

                                                                       
Query: 121 tgttaaaataaccaaaccttatagcacagaacactaaatttgaatatatagaaatggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttaaaataaccaaaccttatagcacagaacactaaatttgaatatatagaaatggaga 380

                                                                       
Query: 181 tgtcatatagaagaatgaatacatgctatgaaggaaagatccaagaagaagtttaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcatatagaagaatgaatacatgctatgaaggaaagatccaagaagaagtttaaaaag 440

                                                                       
Query: 241 agtattattacatatcgacgtaggtgcccaagtacctggcgatagaattcttacaaacac 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtattattacagatcgacgtaggtgcccaagtacctggcgatagaattcttacaaacac 500

                                                                       
Query: 301 tagatgaatttgtatgcattcatgagcaccggacagatctgtctgatacaaagcaggctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagatgaatttgtatgcattcatgagcaccggacagatctgtctgatacaaagcaggctc 560

                                                                       
Query: 361 acactgggataaaaggatggagatctaacctaagattatcctggacaagatggcattaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acactgggataaaaggatggagatctaacctaagattatcctggacaagatggcattaac 620

                                                                       
Query: 421 caggaagtaaacccaagaggacaaaaatggtctgcaatgtaacatgtatctattctacga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggaagtaaacccaagaggacaaaaatggtctgcaatgtaacatgtatctattctacga 680

                                                                       
Query: 481 ctacttctaataactttagtcactttcttgtttctcgttttagtggtttcatttggccaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctacttctaataactttagtcactttcttgtttctcgttttagtggtttcatttggccaa 740

                                                                      
Query: 541 ctggttaaggaactttaaacttccccaggaatagacggctagtgataaaatactgtcag 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctggttaaggaactttaaacttccccaggaatagacggctagtgataaaatactgtcag 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no334_f21.g1 MSMg01no334_f21.g1 CHROMAT_FILE:
MSMg01no334_f21.g1 PHD_FILE: MSMg01no334_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:46 2005
         (219 letters)



>mm_chr2_84691354_84691972
          Length = 619

 Score =  424 bits (219), Expect = e-123
 Identities = 219/219 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctctatctgttacgtacactgtcaaggacaccaggaaatgatccctttaccgaaaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ccctctatctgttacgtacactgtcaaggacaccaggaaatgatccctttaccgaaaggg 360

                                                                       
Query: 61  tcgaagaggctctgtctaagcctggcactagcgagagctaaccacagggtgaccctggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tcgaagaggctctgtctaagcctggcactagcgagagctaaccacagggtgaccctggag 300

                                                                       
Query: 121 gtagcatactggcagtagttagagcccacgggcagtctgcaacagcaaaaggctcttggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtagcatactggcagtagttagagcccacgggcagtctgcaacagcaaaaggctcttggt 240

                                                  
Query: 181 taggcttgtcagcggggggcagggccaacaagtggtggg 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 taggcttgtcagcggggggcagggccaacaagtggtggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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