BAC Information

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BAC

Clone NameMSMg01-334F24
Chromosome2 (Build37)
Map Location 119,443,313 - 119,443,555
singlet/doubletsinglet
Overlap geneOip5
Upstream geneBub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307
Downstream geneNusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334F24.T7 (MSMg01no334_f24.b1)MSMg01-334F24.TJ (MSMg01no334_f24.g1)
ACCAG449887AG449888
length711781
length of high quality
(start - end)
243 (73 - 315)165 (127 - 291)
definitionCHROMAT_FILE: MSMg01no334_f24.b1 PHD_FILE: MSMg01no334_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:47 2005CHROMAT_FILE: MSMg01no334_f24.g1 PHD_FILE: MSMg01no334_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGCGG
AATTCCTGAGGTGTTTCCATCTATATATTTCCCGATTTAATGACAGTGAA
GAGTATGTAACTGTTGTAAACAAGACCGAAACTTTGTCTTGTGACATGTT
TACGCTCTCCATAGAGTATGTTTGAGTTGTAAACTCTTTACCGGTTTGAA
TCATATAAACATGGCATTGGTGAAAGTTAAAGTTGGATGTAGGTTTTAAG
GTCTGTGAGAGAACTAGGACTATTAGTTATTAGTTATTAGTTATTAGTTA
TAATTTCCCAGGGTTGGTAGAAAATTTTTTTTACCACAGATTTTTTCCGG
GGCGGAGGGTCTTTTTCCCTTTTGATATAGTTACAAACTATTTTACTTTT
GATATTGGTAATAAAGGTCTTTTCCTTGCAATTTACATTTTTTCTTCCTG
TCTCCGACTTGCCTGGGTATTTACAATCATGGTCAACCTGTCTCCCAACC
CCCTTTTCTTTTCGGCTATTTTTTGTTTTTTGGAAAACCGGCCTTTTCTT
TTTGTTATAAATACTTCGCGTTTTTTTCTTTTCCCTTTTTTCTTCTTCAC
TTTTTCCCCTTTCTATTTTATAGTTACGTCTTTTATAAAAACATCTTTTT
TCTTCCTCCCTCCTCCCCCATATTTTTTCTATACTTTTCCCTTCTTTCCC
CCCCCCCCTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTACTCGTGAAC
TATAGAAGGTCTGACCANTACCAATAGCCTTCACTGACAGCCTGGGCTAC
AAGACAACTTACCTCATTCAAACCCAAAATGTTCTTTAAAATATTTCTCG
GGAGCCGGGTGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAT
GGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTC
CTTTATTGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAACAA
AAAAAAACAAAAAAAAAAAATTATATTGTGTTTAAATTAAAAAAGAACAC
TGCTGGGGGCTGGCGATATGTTTTTTTGCCCACCCGCGCCTACTGCTCTT
CCAAAGGTCCTAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCA
TCTGCAACGAAATCTGATGCCCTTTTCTGGAGTGTCTGAATACAGCTACA
GCGTACTTACATATAATAAATAAATAAATCTTTCAAAAAAAAAAAAAAAA
AACATTGCCACTTACTGGCCACCTGATTTTATTGACCATCATTTTCGCCC
CCCGTAAAACATGTATAAACCCCCACCCACTTTTATTCGAAAATTCTAAA
GGACAAGGCTATTTACCTTTCTTTACTACGCTAATCTATTTATCCCCCTC
ACTCAAACAATATTTACTACCTAAATCTTTTTACACCCGCTTTCACTCAT
ATCCACCCCTTTACCACCCCACCTCCCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_f24.b1 MSMg01no334_f24.b1 CHROMAT_FILE:
MSMg01no334_f24.b1 PHD_FILE: MSMg01no334_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:47 2005
         (243 letters)



>mm_chr2_119443113_119443755
          Length = 643

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatatttcccgatttaatgacagtgaagagtatgtaactgttgtaaacaagaccgaaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 443 atatatttcccgatttaatgacagtgaagagtatgtaactgttgtaaacaagaaagaaac 384

                                                                       
Query: 61  tttgtcttgtgacatgtttacgctctccatagagtatgtttgagttgtaaactctttacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttgtcttgtgacatgtttacgctctccatagagtatgtttgagttgtaaactctttacc 324

                                                                       
Query: 121 ggtttgaatcatataaacatggcattggtgaaagttaaagttggatgtaggttttaaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggtttgaatcatataaacatggcattggtgaaagttaaagttggatgtaggttttaaggt 264

                                                                       
Query: 181 ctgtgagagaactaggactattagttattagttattagttattagttataatttcccagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 263 ctgtgagagaactaggactattagttattagttattagttattagttataatttctcagg 204

              
Query: 241 gtt 243
           |||
Sbjct: 203 gtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)