BAC Information

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BAC

Clone NameMSMg01-334I23
Chromosome2 (Build37)
Map Location 6,111,813 - 6,112,315
singlet/doubletsinglet
Overlap geneEchdc3
Upstream geneCcdc3, LOC100040292, Camk1d, LOC666599, Cdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939
Downstream gene1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334I23.T7 (MSMg01no334_i23.b1)MSMg01-334I23.TJ (MSMg01no334_i23.g1)
ACCAG450026AG450027
length693718
length of high quality
(start - end)
533 (102 - 634)250 (75 - 324)
definitionCHROMAT_FILE: MSMg01no334_i23.b1 PHD_FILE: MSMg01no334_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:01 2005CHROMAT_FILE: MSMg01no334_i23.g1 PHD_FILE: MSMg01no334_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCCTATAGTACGAACTCAGCGGNATTCTTTTTTGGTAACAAAGAAAG
GAGGGAGAGAATCCAGGATTGTAGACACAGATACTTACTGGGGAAATGCC
TCCTTCTGCTGGTCTAATATTTTATCCTCAAACTTGTGGAGAAGAGCAAC
ATGCCAGAGTGCTCTAGGCTAGCCTCTTCCACCCTTGTGCTGTAATCCCT
ACGAGGCCCTGAGTCCTCTTCTCCCCACCTTGTGTCCATCCCAGTGCATC
AGCAGCCAGCCCCCTGCCTTCCACCAGCTTTTTCTCTGTTCTCTTGGTTC
TCTGCCTCAACAGCTATGACTTCTGGGACATGTGCAGGGTCACTGTGGTG
CCTGTTGTGCTGTTTTGTATGAGGTAGGGAATGTAGCGATCTGAACCTGA
CTGCAGCCCAGAGGCAAAGCAGAGATCCCAGAACAAAGTTCTCAGGGGAG
CCAGACAGGAAAGGCTTCTCTCACCAGCATGTGGTACCAAGACTGAGCAT
CCAAGAGACTGAACACCCAAGAGAAGGGCGGATGGAAAGACTGCACCTTT
CGTCCTGGGTTGGCAGCTGTAAGATCCTTTGTGCTGCACTCTACTTGCCT
TCCTAGGCTCATTCATTCCTTTAAGGAAGGTTGTCTGCATTGTGCAAGGA
AGTCTCCTAGTGCTGGGGATAAGGAACAGGACGTGCACCCACT
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGCCCAAAATCAAGGCAGCTTGTTCTACATTGCCAGC
TCCAGAACAGTTGGGACTGCATACAGAAGCCCTGTGTCAAAAAAAATTAA
AATTAAAAAAAAAAAAGTGTAAGCCAGGTGTGGTGGCAACATGCCTTTAA
TCCCAGCACTCGGGAGGTAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAG
CCTGGTCTACAGTGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAATC
CTGTCTCGAAAAACCAAAAAAAAATTTTTTAAAAAAAAAAAAAAAAAAGT
GCATGTGTAATTGATGTCATTATGTTCTGATAAGATACAGAAATGACTTA
TGTTCCTTAACACTTTATGGCTTTAGATTGCCATCCCTTTTAAAAATGGT
TTAACTCTTTGGCTTTTTTTTTTTTTCTGACTTCTAACTTAACTCTTAAA
TATCCTTTTTGATATTAGTTTGCCTGACTTACCTAAAGATAGGAACGGAG
TTTGAAATCACCCATTATTGTATTAGGAACTATGTCATCTTTTTTACCCA
TTAGAGTTTGTGTTATGAAATTGGGAACTCCCAATATTCAGAATATATTT
ACCCACTATTGTTGAACCTTTTTTGGTTCATTTCATACCTTTATTTATTT
ATTTTTATTGGAAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_i23.b1 MSMg01no334_i23.b1 CHROMAT_FILE:
MSMg01no334_i23.b1 PHD_FILE: MSMg01no334_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:01 2005
         (533 letters)



>mm_chr2_6111725_6112657
          Length = 933

 Score =  803 bits (415), Expect = 0.0
 Identities = 489/533 (91%), Gaps = 30/533 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttctgctggtctaatattttatcctcaaacttgtggagaagagcaacatgccagagtg 60
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 591 ccttcttctggtctaatattttatcctcaaacatgtggagaagagcaacatgccagagtg 532

                                                                       
Query: 61  ctctaggctagcctcttccacccttgtgctgtaatccctacgaggccctgagtcctcttc 120
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 531 ctctaggctaacctcttccacccttgtgttgtaatccctacgaggccctgagtcctcttc 472

                                                                       
Query: 121 tccccaccttgtgtccatcccagtgcatcagcagccagccccctgccttccaccagcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tccccaccttgtgtccatcccagtgcatcagcagccagccccctgccttccaccagcttt 412

                                                                       
Query: 181 ttctctgttctcttggttctctgcctcaacagctatgacttctgggacatgtgcagggtc 240
           |||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct: 411 ttctctgttctcttggttctttgcctcagcagctaagacttctgggacatgtgcagggtc 352

                                                                       
Query: 241 actgtggtgcctgttgtgctgttttgtatgaggtagggaatgtagcgatctgaacctgac 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 actgtggtgtctgttgtgctgttttgtatgaggtagggaatgtagcgatctgaacctgac 292

                                                                       
Query: 301 tgcagcccagaggcaaagcagagatcccagaacaaagttctcaggggagccagacaggaa 360
           ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 291 tgcagcccagaggcaaagcagagatcccagaacaaggttctcaagggagccagacaggaa 232

                                                                       
Query: 361 aggcttctctcaccagcatgtggtaccaagactgagcatccaagagactgaacacccaag 420
           |||||||||||||||||||||||||                              |||||
Sbjct: 231 aggcttctctcaccagcatgtggta------------------------------ccaag 202

                                                                       
Query: 421 agaagggcggatggaaagactgcacctttcgtcctgggttggcagctgtaagatcctttg 480
           |||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct: 201 agaagggcggatggaaagactgcacctttcatcctgggttggcagctgtaaggtgctttg 142

                                                                
Query: 481 tgctgcactctacttgccttcctaggctcattcattcctttaaggaaggttgt 533
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tgctgcactctgcttgccttcctaggctcattcattcctttaaggaaggttgt 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)