BAC Information

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BAC

Clone NameMSMg01-334P04
Chromosome2 (Build37)
Map Location 127,195,432 - 127,370,944
singlet/doubletdoublet
Overlap geneA530057A03Rik, Fahd2a, Kcnip3, Prom2
Upstream geneAtp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b
Downstream geneZfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424, LOC100043729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334P04.T7 (MSMg01no334_p04.b1)MSMg01-334P04.TJ (MSMg01no334_p04.g1)
ACCAG450319AG450320
length729727
length of high quality
(start - end)
657 (73 - 729)605 (81 - 685)
definitionCHROMAT_FILE: MSMg01no334_p04.b1 PHD_FILE: MSMg01no334_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:32 2005CHROMAT_FILE: MSMg01no334_p04.g1 PHD_FILE: MSMg01no334_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,370,364 - 127,370,944)(127,195,432 - 127,196,036)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAATCCGCGGA
ATTCCTAGCAGTTGACACTGTAGAGGCATGTGCCTATAGCCAGCTTTTCT
CCCCTCCTGCAGACAGAGTCTTACTCTATAGCCCTGGCTGCCCTCAAATC
CACCATCCTCATCTCTCTACCTCAGCTTCCCACATGGTGGAATTACAGTT
GTGTAGATATGGACAGCCACCTGACTTTACTGTCTACTCCAGATTCACAT
TCTGTGCAAAGCCAAGACAATCCCTCATTTGAAGACAGTGTGCCAGAAGT
TTTCAATGTATGACAGTGTGGAAGGGAACCTGTATAGCCATCCTGTACTC
CATTTTCAGTATTTAGCAAATTATGTGAGTCATTCAACACTTCATTATAA
AAGAGTCTCAGCAAGGAAAAGCACTTGCCCCCAACCGGATGACCCGAGTT
TGGTCCCTAGGATCCACATGGTGGGAGAAGAGAACCAACTCCCAAAAGCT
GTCTTCTGACCTCCATACATGTTTTCCATGCCCTCATCTCACAAGTAAAT
ATAATTTTTTAAAGTTGGGGGGAAGGTAGATGGCTCATCAGTTACTAGCA
TATTCGGCTCTTGCAGTGGACCTGAGTTTAGTTCCAACCATCACACCAAG
TGGCTCAGTATCATCTGTAACTCCAGCTCCAGAGGATATGATGCCTCCGG
CCTCTGTGGGCACCTGTTGTACCCATGTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAATTCCTATTTAGAG
CATCCTGGACCACCTGCTCAGAACAGGAGGCTCTGGAAACAAGGGAAGTC
TTGTCGGTATTCAGGCCCAAGCCCTGTGTGGCTTCCATTGGGCACATGTG
TGCAAGGAAAGTCACCTGAGGACCAGCCTGTAAGTGGGGCAGCTGCTGGC
TGGGAGGAGCTTCTGGCCCAGCTAGAGCTGATACAGGACAACCTTTGGCT
TCCCTACTGAGACCGGGAAATCTTCTCTCAGGACCTGGTCACTGTGGGTG
GTGGGGCTGGTGTGGGGCTTGTGTTTCCATGAAATCTCAGTGGGGAGGTG
GATTGCCCAGGGTTTGTGTCCTGCCTCTGCTAGATCTGAGCTTCTTTGAG
AAAGGCTTCACCCTTCTCTGGGCCTCCTTGTCTTTGCCTGCCTATGGATG
ATTGATTGCCCCAATGGTCCCACAGTTCTCCAGCCTGTGGCTTCCTCTCT
GCCCTCCTCCTCCTCCCAGCTCCCTGCAAGGTCCAGTTATGGGGATTCTT
CAAATGAATCAACCGTGTTAATCAGTTGTTCTCAAGGCTTGAATCCTGCC
AGGATCAGGCTGTTTGCCTCGCTTTTGTACCTCAGAGAAGAACTGCGCAC
CAGGCCTACAGTGACCAGATCTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_p04.b1 MSMg01no334_p04.b1 CHROMAT_FILE:
MSMg01no334_p04.b1 PHD_FILE: MSMg01no334_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:32 2005
         (657 letters)



>mm_chr2_127370364_127371420
          Length = 1057

 Score = 1069 bits (553), Expect = 0.0
 Identities = 574/581 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggcatgtgcctatagccagcttttctcccctcctgcagacagagtcttactctatagc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gaggtatgtgcctatagccagcttttctcccctcctgcagacagagtcttactctatagc 522

                                                                       
Query: 61  cctggctgccctcaaatccaccatcctcatctctctacctcagcttcccacatggtggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cctggctgccctcaaatccaccatcctcatctctctacctcagcttcccacatggtggaa 462

                                                                       
Query: 121 ttacagttgtgtagatatggacagccacctgactttactgtctactccagattcacattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 461 ttacagttgtgtagatatggacagccacctgactttactgtctactccagattcacatta 402

                                                                       
Query: 181 tgtgcaaagccaagacaatccctcatttgaagacagtgtgccagaagttttcaatgtatg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgtgcaaagacaagacaatccctcatttgaagacagtgtgccagaagttttcaatgtatg 342

                                                                       
Query: 241 acagtgtggaagggaacctgtatagccatcctgtactccattttcagtatttagcaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 acagtgtggaagggaacctgtatagccatcctgtactccattttcagtatttagcaaatt 282

                                                                       
Query: 301 atgtgagtcattcaacacttcattataaaagagtctcagcaaggaaaagcacttgccccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 atgtgagtcattcaacacttcattataaaagagtctcagcaaggaaaagcacttgccccc 222

                                                                       
Query: 361 aaccggatgacccgagtttggtccctaggatccacatggtgggagaagagaaccaactcc 420
           |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 221 aaccggatgacctgagtttggttcctaggatccacatggtgggagaagagaaccaactcc 162

                                                                       
Query: 421 caaaagctgtcttctgacctccatacatgttttccatgccctcatctcacaagtaaatat 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 161 caaaagctgtcttctgacctccatacatgttttccatgtcctcatctcacaagtaaatat 102

                                                                       
Query: 481 aattttttaaagttggggggaaggtagatggctcatcagttactagcatattcggctctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 aattttttaaagttggggggaaggtagatggctcatcagttactagcatattcggctctt 42

                                                    
Query: 541 gcagtggacctgagtttagttccaaccatcacaccaagtgg 581
           |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 41  gcagtggacctgagtttagttccaaccatcacaccatgtgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no334_p04.g1 MSMg01no334_p04.g1 CHROMAT_FILE:
MSMg01no334_p04.g1 PHD_FILE: MSMg01no334_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:32 2005
         (605 letters)



>mm_chr2_127195232_127196236
          Length = 1005

 Score = 1131 bits (585), Expect = 0.0
 Identities = 600/605 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgagaattcctatttagagcatcctggaccacctgctcagaacaggaggctctggaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgagaattcctatttagagcatcctggaccacctgctcagaacaggaggctctggaaac 260

                                                                       
Query: 61  aagggaagtcttgtcggtattcaggcccaagccctgtgtggcttccattgggcacatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagggaagtcttgtcggtattcaggcccaagccctgtgtggcttccattgggcacatgtg 320

                                                                       
Query: 121 tgcaaggaaagtcacctgaggaccagcctgtaagtggggcagctgctggctgggaggagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaaggaaagtcacctgaggaccagcctgtaagtggggcagctgctggctgggaggagc 380

                                                                       
Query: 181 ttctggcccagctagagctgatacaggacaacctttggcttccctactgagaccgggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctggcccagctagagctgatacaggacaacctttggcttccctactgagaccgggaaa 440

                                                                       
Query: 241 tcttctctcaggacctggtcactgtgggtggtggggctggtgtggggcttgtgtttccat 300
           ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 tctgctctcaggacctggtcactgtgggtggtagggctggtgtggggcttgtgtttccat 500

                                                                       
Query: 301 gaaatctcagtggggaggtggattgcccagggtttgtgtcctgcctctgctagatctgag 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaatctcagtggggaggtgggttgcccagggtttgtgtcctgcctctgctagatctgag 560

                                                                       
Query: 361 cttctttgagaaaggcttcacccttctctgggcctccttgtctttgcctgcctatggatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttctttgagaaaggcttcacccttctctgggcctccttgtctttgcctgcctatggatg 620

                                                                       
Query: 421 attgattgccccaatggtcccacagttctccagcctgtggcttcctctctgccctcctcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attgattgccccaatggtcccacagttctccagcctgtggcttcctctctgccctcctcc 680

                                                                       
Query: 481 tcctcccagctccctgcaaggtccagttatggggattcttcaaatgaatcaaccgtgtta 540
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 tcctcccaactccctgcaaggtccagttatggggattcttcaaatgaatcaactgtgtta 740

                                                                       
Query: 541 atcagttgttctcaaggcttgaatcctgccaggatcaggctgtttgcctcgcttttgtac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcagttgttctcaaggcttgaatcctgccaggatcaggctgtttgcctcgcttttgtac 800

                
Query: 601 ctcag 605
           |||||
Sbjct: 801 ctcag 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)