CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCTCTCATAACCCATCTCTAAAACTCTTCTTCAAACTGAATGTCCCT
CTCTTCTCCATCCTGTCCATCTCTATATCCATCCTCCTAACTTCCTCTAA
CTCTCTTTGTTTTATTTCTCAGTAATTTATTTAATTCTGTTAACAGTATT
CAAGCAGAAATCTCTTGAATTAAAAGTGTATGCTAAGGCTGTGCCACACT
ACAATTATAAAAAGGTTTTTCCTGGCAAATAACACAATCATGTTAACAGG
AGTCAATGTGTGGCTAAGGTAGGTGTTGGTCTGTAAGGCTGCAAAGCAGC
GAGCAAAGATGACAGGGTAAGGGATTGAGTAAACAGGCAGGGAGAGGGAA
TGGTAGGGGTGAAAATCCTGGGTTTAGAGTCTGTAATCCATACATGATCC
CCAAAGGAGAGACAGAAAGAAACGGTACAGGGAGGACTCTTAGAAATGAC
AGGAGCAGAATTGAAGGAATTGGAGATGGTTGTACTGAGGTGTGCTGATG
GAGAGAACCTGGTGACGGGGCTGATGGTGAGTGTGCTAGAGTGGAGGTGG
TGATGACAGCTACGGGGTTTTTAATAGAGATGGAAAGTGAGGTATTGGAG
CTTGTGCTAGTATTAGTAAAGGTAGAATGAAGGCAGTGGAGTAAATGTGG
AAGCATTTAGG

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACGGAAAGGCT
GAGAAGCACCTGAAAAAATGCTCAGCATCCTTAATCATCAGAAAAATGCA
AGTCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGA
ACACTCCTTCATTGTTGGTGGAATTGCAAGCTTGTACAAACACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCTAACCGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGGACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAA
TGTGGTACATTTACACAATGGAGTATTACTCAGTTATTAAAAAGAATGAA
TTTATGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGATCCAGGATATT
GGATATTATATTATCCAATAATATTGGATATTATTGGATCACATCATCCT
GAGTGAGGTAACACAATCACAAAAGAACTCAAATGATATGTACTCACTGA
TAAATGGATATTAGC

Query= MSMg01no334_p13.b1 MSMg01no334_p13.b1 CHROMAT_FILE:
MSMg01no334_p13.b1 PHD_FILE: MSMg01no334_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:34 2005
         (646 letters)



>mm_chr2_137312690_137313735
          Length = 1046

 Score = 1015 bits (525), Expect = 0.0
 Identities = 630/703 (89%), Gaps = 62/703 (8%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctctcataacccatctctaaaactcttcttcaaactgaatgtccctctcttc 63
           ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ggaatcccctctcagaagccatctctaaaactcttcttcaaactgaatgtccctctcttc 205

                                                                       
Query: 64  tccatcctgtccatctctatatccatcctcctaacttcctctaactctcttt-gttttat 122
           ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
Sbjct: 206 tccatcctgtccatctctatatctatcctcctaacttcctctaactctctttggtttt-t 264

                                                                       
Query: 123 ttctcagtaa-------------------------------------------------- 132
           | ||||||||                                                  
Sbjct: 265 tcctcagtaatcttatgttcatttcctgtcaactagttgcttgctctgccccttgactta 324

                                                                       
Query: 133 --------tttatttaattctgttaacagtattcaagcagaaatctcttgaattaaaagt 184
                   |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 tggctggctttatttaattctgtttacagtattcaagcagaaatctcttgaattaaaagt 384

                                                                       
Query: 185 gtatgctaaggctgtgccacactacaattataaaaaggttttt-cctggcaaataacaca 243
           ||||||||||||||||||||||||||| ||||||||||||||| || | |||||||||||
Sbjct: 385 gtatgctaaggctgtgccacactacaactataaaaaggttttttccag-caaataacaca 443

                                                                       
Query: 244 atcatgttaacaggagtcaatgtgtggctaaggtaggtgttggtctgtaaggctgcaaag 303
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 444 atcatgttaacaggagtcaatgtgtggccaaggtaggtgctggtctgtaaggctgcaaag 503

                                                                       
Query: 304 cagcgagcaaagatgacagggtaagggattgagtaaacaggcagggagagggaatggtag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagcgagcaaagatgacagggtaagggattgagtaaacaggcagggagagggaatggtag 563

                                                                       
Query: 364 gggtgaaaatcctgggtttagagtctgtaatccatacatgatccccaaaggagagacaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gggtgaaaatcctgggtttagagtctgtaatccatacatgatccccaaaggagagacaga 623

                                                                       
Query: 424 aagaaacggtacagggaggactcttagaaatgacaggagcagaattgaaggaattggaga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagaaacggtacagggaggactcttagaaatgacaggagcagaattgaaggaattggaga 683

                                                                       
Query: 484 tggttgtactgaggtgtgctgatggagagaacctggtgacggggctgatggtgagtgtgc 543
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 684 tggttgtactgaggtgtgctgatggagagaacctggtgacagggctgatggtgagtgtgc 743

                                                                       
Query: 544 tagagtggaggtggtgatgacagctacggggtttttaatagagatggaaagtgaggtatt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tagagtggaggtggtgatgacagctacggggtttttaatagagatggaaagtgaggtatt 803

                                                      
Query: 604 ggagcttgtgctagtattagtaaaggtagaatgaaggcagtgg 646
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ggagcttgtgctagtattagtaaaggtagaatgaaggcagtgg 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)