BAC Information

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BAC

Clone NameMSMg01-334P24
Chromosome2 (Build37)
Map Location 16,090,465 - 16,284,030
singlet/doubletdoublet
Overlap genePlxdc2
Upstream geneLOC667329, LOC227588, LOC625457
Downstream gene4930515L03Rik, LOC383665, Nebl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334P24.T7 (MSMg01no334_p24.b1)MSMg01-334P24.TJ (MSMg01no334_p24.g1)
ACCAG450359AG450360
length740709
length of high quality
(start - end)
537 (75 - 611)238 (63 - 300)
definitionCHROMAT_FILE: MSMg01no334_p24.b1 PHD_FILE: MSMg01no334_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:36 2005CHROMAT_FILE: MSMg01no334_p24.g1 PHD_FILE: MSMg01no334_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,283,494 - 16,284,030)(16,090,465 - 16,090,702)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAAAACGCGG
AATTCATCAGATTATTGACAAATGGAAAAGCAGGTTAGTAATACATAACT
GAATGTACTGTAGAGATTTGATAAGACTCACTTCTTTCTAACTTTCCAAG
TAAATTGAGGATGATATTTTAAGTGAGTAAAGATGCCTTAGTCTGCTTTC
TGTTTATGTACCAGAATCCCTGATACTGCCTTGGACGGAAGAGAGGTAAC
TAACCACATGGTAGACACAGAAAACTTTGAATGTGTTAAGTTACAAGCTC
GTCAGAGAATAAACCAAAGCTCGGCACTTGATAATAAATAATTAGTCACA
GAATTGTCATTCTGGCATTAAGTATTTTTTAACAAGCCTGTCTTGCATTG
TCACAGCACAGAGGAGAAACAGAAAACAAAGAAGAGACAACCACTCAGAG
ACAGGGGTCAGTCTACAACAGCTGCCCTGGAAAACTGCCCTAATCTTCGG
AACAGCCCAAGTGTGCTTAAAGGCAATACCATGTTTCAATGCTGTTTACT
TGGGAACCAAATTTCAATCTGCAGTTTGGCTGGACCCAGCCACAGCAAAA
ACATGCTGAAGGTAACAAGGTAACAAGCTCATACCCACAGTATAGGAGAT
AAAGCCTACTTATCAGTTGACCGCTGACCATAAATTGTACTTTGAACTCT
TCTATGAGTCCCATATTTTGACAGGTAACATCCCGCCCTG
GGCGGACGCCTGGCCGTACTTATCGGGGAACTATAGAAGGATTTCCCACA
TCAGGAGAGAGGCAAAGCCTAAATCCTAATTAGTTAACAAAGGGAATGCC
ACACTTTCATAAGGTACAAGTTTAAACAGAGGCTGTAGAGTCACATGTTA
AAGGCTGATTAATTTTTTGTTATTGGTTTCCCTCCACAGGTTATGAAATT
ATATTGTTAATTAAAGGCACAGGACAAAATAAATGTGCATGAGGGCAAAT
GTAGAGTAGAGATAAAAATGGGCAGGGATATTTTGGGCAGATGGCTAGCA
TTGCTCTCCAATGAAATGCTGTTTAAAAGAGTAGCAGAAGATTAATTTCT
AAAATGAACCTTTAGATGTTAATAATTAGTTCATGGAGTTGATGGGCAAG
AATTAAATATCAAAGTAGCATAAACCTTTTTTACTATAGGAAAAATGGTG
GTGGTAGAAGCAGGAGCTGGACTGTGTGGATGGTGTTGATTTTAAGAGAG
ACCTACTATCCTATTAAACTCTCCAGCGAGTATGTTTCCAGCCACTCCCA
GGATCTACCAAACAGTCGTTCACTAAAGCATGGCTTTGTTTTTAATTATC
GTGGTGTATTTTTTAGCCTTTGCTCTTGGATTCCATATAGGTTACCACTC
ACAGATTGCTTGTGGAAATTATTTGTCATGAGTTCTGGCGTAGTAAGCTC
ACACTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_p24.b1 MSMg01no334_p24.b1 CHROMAT_FILE:
MSMg01no334_p24.b1 PHD_FILE: MSMg01no334_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:36 2005
         (537 letters)



>mm_chr2_16283294_16284230
          Length = 937

 Score =  977 bits (505), Expect = 0.0
 Identities = 529/537 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaaagcaggttagtaatacataactgaatgtactgtagagatttgataagactcacttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 737 gaaaagcaggttagtaatacataactgaatgtactgtagagatttgataagattcacttc 678

                                                                       
Query: 61  tttctaactttccaagtaaattgaggatgatattttaagtgagtaaagatgccttagtct 120
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 677 tttctgactttccaagtaaattgaggatgatattttaagtgagtaaagatcccttagtct 618

                                                                       
Query: 121 gctttctgtttatgtaccagaatccctgatactgccttggacggaagagaggtaactaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gctttctgtttatgtaccagaatccctgatactgccttggacggaagagaggtaactaac 558

                                                                       
Query: 181 cacatggtagacacagaaaactttgaatgtgttaagttacaagctcgtcagagaataaac 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cacatggttgacacagaaaactttgaatgtgttaagttacaagctcgtcagagaataaac 498

                                                                       
Query: 241 caaagctcggcacttgataataaataattagtcacagaattgtcattctggcattaagta 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caaagcttggcacttgataataaataattagtcacagaattgtcattctggcattaagta 438

                                                                       
Query: 301 ttttttaacaagcctgtcttgcattgtcacagcacagaggagaaacagaaaacaaagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttttttaacaagcctgtcttgcattgtcacagcacagaggagaaacagaaaacaaagaag 378

                                                                       
Query: 361 agacaaccactcagagacaggggtcagtctacaacagctgccctggaaaactgccctaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agacaaccactcagagacaggggtcagtctacaacagctgccctggaaaactgccctaat 318

                                                                       
Query: 421 cttcggaacagcccaagtgtgcttaaaggcaataccatgtttcaatgctgtttacttggg 480
           |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 317 cttcggaacagccctagtgtgcttaaaggcaataccatgtttcagtgctgtttacttggg 258

                                                                    
Query: 481 aaccaaatttcaatctgcagtttggctggacccagccacagcaaaaacatgctgaag 537
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 257 aaccaaatttcaatctgcagtttggctggacccagccacaacaaaaacatgctgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no334_p24.g1 MSMg01no334_p24.g1 CHROMAT_FILE:
MSMg01no334_p24.g1 PHD_FILE: MSMg01no334_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:36 2005
         (238 letters)



>mm_chr2_16090265_16090902
          Length = 638

 Score =  414 bits (214), Expect = e-120
 Identities = 232/238 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagcctaaatcctaattagttaacaaagggaatgccacactttcataaggtacaagtt 60
           |||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 201 caaagcttaaatcctaattagttaacaaagggaatgccaaagtttcataaggtacaagtt 260

                                                                       
Query: 61  taaacagaggctgtagagtcacatgttaaaggctgattaattttttgttattggtttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaacagaggctgtagagtcacatgttaaaggctgattaattttttgttattggtttccc 320

                                                                       
Query: 121 tccacaggttatgaaattatattgttaattaaaggcacaggacaaaataaatgtgcatga 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 tccacaggttatgaaattatattgtcaattaaaggcacaggacaaaataaatgtgcatga 380

                                                                     
Query: 181 gggcaaatgtagagtagagataaaaatgggcagggatattttgggcagatggctagca 238
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 381 gggcaaatgtagagtagagataaaaatgggcaggaacattttgggcagatggctagca 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)