Query= MSMg01no335_a18.b1 MSMg01no335_a18.b1 CHROMAT_FILE:
MSMg01no335_a18.b1 PHD_FILE: MSMg01no335_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:40 2005
(614 letters)
>mm_chr2_168098075_168099091
Length = 1017
Score = 973 bits (503), Expect = 0.0
Identities = 574/615 (93%), Gaps = 29/615 (4%)
Strand = Plus / Minus
Query: 1 aatgagcggctaatggggagcctctgccggagggcgagtgggggtgcaagggagactcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 aatgagcggctaatggggagcctctgccggagggcgagtgggggtgcaagggagactcct 859
Query: 61 ggagagaagaggttcccgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgag 120
|||||||||||| |||| |||||||||||||||||||
Sbjct: 858 ggagagaagaggctccc------------------------gagtgagtgagtgagtgag 823
Query: 121 cgagcgagcgtcggctggggaaacgaggttcccaggctgttctagccaagtagagcacgg 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 cgagctagcgtcggctggggaaacgaggttcccaggctgttctagccaagtagagcacgg 763
Query: 181 ctctcctcttgtctctggtggcaggataaagcggcagagttgagaaacaaggaactcttg 240
||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||
Sbjct: 762 ctctcctcttgtctctggtggcaggat-aagcagcagagttgagaagcaaggaactcttg 704
Query: 241 aagcacctaaagggattgttcccacgcctccgagggatcccggcaggcttagcctgagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aagcacctaaagggattgttcccacgcctccgagggatcccggcaggcttagcctgagga 644
Query: 301 catgggttccaattttaggagaagtgtaaatctctctcagccgctctaaaatgcagtcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 catgggttccaattttaggagaagtgtaaatctctctcagccgctctaaaatgcagtcat 584
Query: 361 tgacttcaaacaggtgtaggctagttccccaacactcggtctgtgaagctacagcttccc 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 583 tgacttcaaacaggtgtaggctagttccccaactctcggtctgtgaagctacagcttccc 524
Query: 421 g----cccccccccactgtgcagggtgctaagcccctgaagtgagcaccctccctgctgg 476
| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 523 gcccccccccccccactgtgcagggtgctaaggccctgaagtgagcaccctcccggctgg 464
Query: 477 gttcccctaaagtcagctgtgcattcctgaccccaaatggattctcccccccacccccat 536
||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 463 gttcccctaaaatcagctgtgcattcctcaccccaaatggattctcccccccccccccat 404
Query: 537 gttggaaatgacaggtctccacctgcactgtttgcttctttcaggaactgaagggagaga 596
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 403 gttggaaatgacaggtctccacccgcactgtttgcttccttcaggaactgaagggagaga 344
Query: 597 taggttttatgtttg 611
|||||||||||||||
Sbjct: 343 taggttttatgtttg 329
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1017
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1007
Effective search space: 608228
Effective search space used: 608228
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_a18.g1 MSMg01no335_a18.g1 CHROMAT_FILE:
MSMg01no335_a18.g1 PHD_FILE: MSMg01no335_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:40 2005
(500 letters)
>mm_chr2_167958710_167959615
Length = 906
Score = 843 bits (436), Expect = 0.0
Identities = 482/506 (95%), Gaps = 16/506 (3%)
Strand = Plus / Plus
Query: 1 agacaggaggtggagagaggagggtcctaggtctggctgaaccactgactgagtttcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 agacaggaggtggagagaggagggtcctaggtctggctgaaccactgactgagtttcagg 250
Query: 61 ttcagtgagagaccctgtctcaaaatataaggtagaggaccaggcattgtggcagtgcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttcagtgagagaccctgtctcaaaatataaggtagaggaccaggcattgtggcagtgcgc 310
Query: 121 acaggcataactttaatccctggacttgggaggcagaggcaagaagatctctgtgggttc 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acaggcgtaactttaatccctggacttgggaggcagaggcaagaagatctctgtgggttc 370
Query: 181 tgggccagccaggtctgcaggagacaccccgtctcaaaagatgaggttataggaatagag 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 371 tgggccagccaggtctgcaggagacaccccgtctcaaaagatgaggttacaggaatagag 430
Query: 241 gaagacacccaacagtgacctttgacctctgcatgcctgcagagagagagagagagagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gaagacacccaacagtgacctttgacctctgcatgcctgcagagagagagagagagagag 490
Query: 301 agagagagagaga----------catgcacactcacgcgagcatacacacatgcacattg 350
||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 491 agagagagagagagagagagagacatgcacactcactcgagcatacacacatgcacattg 550
Query: 351 acctgagtaaaagcagcaataaattaaaagccagcaccatgtgaccacagggagcctgcc 410
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 acttgagtaaaagcagcaataaattaaaagccagcaccatgtgaccacagggagcctgcc 610
Query: 411 ggtgccaaggggacttgctgttag-cc-----catcaccatcgtgccagacatttgttcc 464
|| |||| |||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 611 ggggccagggggacttgctgttagaccatcaccatcaccatcgtgccagacatttgttcc 670
Query: 465 ttaagcgctctgtatttatgtattta 490
|||||| |||||||||||| ||||||
Sbjct: 671 ttaagctctctgtatttatttattta 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 906
Length adjustment: 10
Effective length of query: 490
Effective length of database: 896
Effective search space: 439040
Effective search space used: 439040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
