BAC Information

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BAC

Clone NameMSMg01-335H19
Chromosome2 (Build37)
Map Location 58,338,385 - 58,516,133
singlet/doubletdoublet
Overlap geneAcvr1
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062
Downstream geneLOC674940, Upp2, BC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335H19.T7 (MSMg01no335_h19.b1)MSMg01-335H19.TJ (MSMg01no335_h19.g1)
ACCAG450731AG450732
length752758
length of high quality
(start - end)		267 (40 - 306)507 (74 - 580)
definitionCHROMAT_FILE: MSMg01no335_h19.b1 PHD_FILE: MSMg01no335_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:16 2005CHROMAT_FILE: MSMg01no335_h19.g1 PHD_FILE: MSMg01no335_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,338,385 - 58,338,650)(58,515,635 - 58,516,133)
sequence
GCTATACGACTCACTATAGTTCCAGGATCCGCGGAATTCCAGGTGCTTTC
TCTATAGAAGCCTCTGAACCTACCGAGAAAGGATCTCATTTTGCCTGCTT
GGGCCCAGCACCTGAATCTTCCAGGACTGATGGCCCTTTGCTCTGATGCT
CAACAACATGAGGACGGAACCCACAGCTACCAGCAGCAGCAGCCTCTGGA
GTTGGCAGTACCAACCTGGTGGACATTTGCTTCAGCATGAATTTTCCATT
CACAGAAAACATTCAGGGGTAGGGAGAGACCTGAAGCTGTTTTCTGAGCA
GACTGTTTCTCTATAAAGTCTTCAAATGTCAACACAGATCTTCGGGCAAG
GCTTAGTCACCTACTGGCATGTCCGTGCAAATCATGTCTTCCTAGAGGGG
CCTGTCACACCACCGACTCTGTTCACTACTCAGTACTTGCTATGAGAGCA
TAAGATGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTCTGCCTAT
ACATTTCCTCCCTTTTTTTCCTTTTCTTTTCCCTTCTTTTTTTCCCCCCT
TTTCTTTTTTTTTTTCCCCCCTTTCTTTTTTTTTCTTCCCCCCTTTCCAC
CCTCCTACTCCTCCATTCTCCACTTCCCCTTTCTCCCCTTCATTTCCTTT
TTTTCTCCCCCCCCCACTTTTTTTCCTTCCCTCTCCCTCCTTTTTCCTTC
TTTTTCCTTTTTCCTTTCACACCTTTCAAAATCATTTTCTCCTCCACCCC
CC

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCAACTTCACACCTATGCTGTGGTGCC
CCTCTCAGCTCCAGTGAATAAATAAATATAATAAAAAGTCTCACTGAAAT
ATTCAGCAGCACACACAGCCAAGACTGTACTTAGTGGGCTGTGGAGAACA
CAGTAAGAGCCTGGCCCCTGGAAAGAGCTATTCAGGAAACCCCGTGAGAC
AGCTGAGTGGCCACTCAAGCCATGAGCTTCTGTGTAGGAGAAAAAGAAGA
ACACAGTAAACTGGGCCTAGAACACACACCCATAATCCCATCCCTCTAGA
TGCTGAGACAGGGGGATAACAAGTTAAGAGCTAATCTGAGCTGTATAGCA
AGATACTAAAATCATCAAGGAAGAGGGAGGAGGGGAGAATGCGACAGACT
TGAGGAAGGGGTTGTTCTACGGAAATCCAGTAGAAGAGTGGACTCCCTGT
TCCTACTGGCAAGATGGCAGTGTCTGAGCCCGATGATAAGGCATCACAGA
TCAACAGTAGCATCCTCAACCCAGTGAATGAAGCAGTTTCATTACACGCC
AAAGGTACCTCAGTTATCTTACATTGAGAAGTAATATGAACCGAGTACTG
TGCTGGTTACATACTAAAGAGTCGGCCTTTCCCCTGCTCCTGCTATTCAA
GCCGCTATATCTTCACTCCTTTTTACCTGGTTTTTTACTCTTCCGGTTTT
TTGTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_h19.b1 MSMg01no335_h19.b1 CHROMAT_FILE:
MSMg01no335_h19.b1 PHD_FILE: MSMg01no335_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:16 2005
         (267 letters)



>mm_chr2_58338185_58338851
          Length = 667

 Score =  484 bits (250), Expect = e-141
 Identities = 262/266 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtgctttctctatagaagcctctgaacctaccgagaaaggatctcattttgcctgct 60
           |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 caggtgctttctttatagaagcctctgaacctaccgagaaaggatctcactttgcctgct 260

                                                                       
Query: 61  tgggcccagcacctgaatcttccaggactgatggccctttgctctgatgctcaacaacat 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tgggcccagcacctgaatcttccagggctgatggccctttgctctgatgctcaacaacat 320

                                                                       
Query: 121 gaggacggaacccacagctaccagcagcagcagcctctggagttggcagtaccaacctgg 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gaggacggaacccacagctaccagcagcagcagcctccggagttggcagtaccaacctgg 380

                                                                       
Query: 181 tggacatttgcttcagcatgaattttccattcacagaaaacattcaggggtagggagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggacatttgcttcagcatgaattttccattcacagaaaacattcaggggtagggagaga 440

                                     
Query: 241 cctgaagctgttttctgagcagactg 266
           ||||||||||||||||||||||||||
Sbjct: 441 cctgaagctgttttctgagcagactg 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no335_h19.g1 MSMg01no335_h19.g1 CHROMAT_FILE:
MSMg01no335_h19.g1 PHD_FILE: MSMg01no335_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:16 2005
         (507 letters)



>mm_chr2_58515635_58516541
          Length = 907

 Score =  957 bits (495), Expect = 0.0
 Identities = 498/499 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaacttcacacctatgctgtggtgcccctctcagctccagtgaataaataaatataata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccaacttcacacctatgctgtggtgcccctctcagctccagtgaataaataaatataata 440

                                                                       
Query: 61  aaaagtctcactgaaatattcagcagcacacacagccaagactgtacttagtgggctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaaagtctcactgaaatattcagcagcacacacagccaagactgtacttagtgggctgtg 380

                                                                       
Query: 121 gagaacacagtaagagcctggcccctggaaagagctattcaggaaaccccgtgagacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gagaacacagtaagagcctggcccctggaaagagctattcaggaaaccccgtgagacagc 320

                                                                       
Query: 181 tgagtggccactcaagccatgagcttctgtgtaggagaaaaagaagaacacagtaaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgagtggccactcaagccatgagcttctgtgtaggagaaaaagaagaacacagtaaactg 260

                                                                       
Query: 241 ggcctagaacacacacccataatcccatccctctagatgctgagacagggggataacaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggcctagaacacacacccataatcccatccctctagatgctgagacagggggataacaag 200

                                                                       
Query: 301 ttaagagctaatctgagctgtatagcaagatactaaaatcatcaaggaagagggaggagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttaagagctaatctgagctgtatagcaagatactaaaatcatcaaggaagagggaggagg 140

                                                                       
Query: 361 ggagaatgcgacagacttgaggaaggggttgttctacggaaatccagtagaagagtggac 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ggagaatgcgacaggcttgaggaaggggttgttctacggaaatccagtagaagagtggac 80

                                                                       
Query: 421 tccctgttcctactggcaagatggcagtgtctgagcccgatgataaggcatcacagatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  tccctgttcctactggcaagatggcagtgtctgagcccgatgataaggcatcacagatca 20

                              
Query: 481 acagtagcatcctcaaccc 499
           |||||||||||||||||||
Sbjct: 19  acagtagcatcctcaaccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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