BAC Information

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BAC

Clone NameMSMg01-335I10
Chromosome2 (Build37)
Map Location 179,606,761 - 179,607,264
singlet/doubletsinglet
Overlap geneCdh4
Upstream geneLOC665264, LOC100043168, LOC100039413
Downstream geneTaf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335I10.T7 (MSMg01no335_i10.b1)MSMg01-335I10.TJ (MSMg01no335_i10.g1)
ACCAG450761AG450762
length730729
length of high quality
(start - end)
505 (76 - 580)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no335_i10.b1 PHD_FILE: MSMg01no335_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:19 2005CHROMAT_FILE: MSMg01no335_i10.g1 PHD_FILE: MSMg01no335_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
CGCGGAATTCATTAAATTTCATTCGACCATTTTCAAGTTAGAGAGTAGAA
AGATAACTAGAACGGCCATCCCTGGGGCTTTCATTCACACCCCTGCAGCC
CAGCATGCAGATTCTGCAGAACAGCCATCAATAATGTATCAGTCAGCCTG
CCCTAGAAAGTAGCAAAGATTCCACAGCATGTCTCTGTAGGCAGCATCCC
TTGCCAGCCTGGACTGCTGTCCAGCTAGCTGCACTCTCCAGGTCAGGCTG
AGCCCATGGCTGGGAGCTCCCTTTTTCTTCCTCAGGTACTGCCCCAGTAC
TGAGACTGCCTTACCCGTAGGGCTGCATGCAAACCTCCTACTCACTCTGG
GCTCTCTGATCCTAGCAGGTGGTCAGTATGGGGGAATATAAATTGAGGCT
GAGAGCCAAGACATATGAACCCCTGGATCCCTCCATCATCCGCTGAGGCC
AAAGCCACTGCTGGCCATTCAGAGAGGGTCTCTGGATCTTCTCAGGCTCG
GGGCTGTTCTGTGCCACCTTCCCATGGTTTCCCAGAAGTCACTACTTTTG
GACTTTCCTACTGGTCACTCTTGGAACCTTGCTGCCCCACCCCTGAAACT
GACAATTGTAGTATCTGAGCCCGTTCTTTTGCTGCTCTCCATCTGGAGAC
TGCTCTGTACCTGATAGTGAGGTGATGGGG
NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAATGTCACAACACTGCAGAAGCTA
TCTGCAGCTGGCAAAATCATGCCCCTGCTAGAACACGAGGCAAATCATAG
TCAGCTGCTGTGGACAGTCTGAAGCAGCCCCATGTCCTACACCCGAGAGT
GTAAAACAAAAACATATTCTTATATTTCTGTTGTTTTTTTATTTATTTAA
GAAACCCAAATTCCGAAATTGTCACTACATTTTTCTGCCTTAGGGAAGGG
TGATGAAGAGAATTATGTATTTGAGCTACACAAGATTAAAAAAAGAGAGA
GATGCATTCTGAACTCTGTGCTCTTTAGTGAGCGAGTCAACACTTCATCC
TAAATCCAGCTATCTACCAACATGCCCTAGGCATGACATTGAAGGATCCT
GTGTGGGGGTCAGCAGGCAAGTTTGTTCTCAGCTAAAGCATCAAGAAGCG
ATGTTAAAATAATTCAGGCTGCATGGCTGACCTAGGGCGCACGCAAGAGC
TGAGCTTTCAGAGTGGGGCTCGGCTTGTGGTGCTGCGGTATCATGTGCAT
GTTTACCACAGTGTCTCCTTGTCTCCTCCACCTAGAGTATCGCTTTCAGT
GTGTATTTGCTGGTGTCTTATATAGACTCTCCTCTTCATAAACGTCCACA
TGGAACCACCCTCGTGTCGTGTTGCTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_i10.b1 MSMg01no335_i10.b1 CHROMAT_FILE:
MSMg01no335_i10.b1 PHD_FILE: MSMg01no335_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:19 2005
         (505 letters)



>mm_chr2_179606561_179607464
          Length = 904

 Score =  915 bits (473), Expect = 0.0
 Identities = 497/509 (97%), Gaps = 9/509 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   accattttcaagttagagagtagaaagataactagaacggccatccctggggctttcatt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 704 accattttcaagttagagagtcgaaagataactagaacggccatccctggggctttcatt 645

                                                                       
Query: 61  cacacccctgcagcccagcatgcagattctgcagaacagccatcaataatgtatcagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 cacacccctgcagcccagcatgcagattctgcagaacagccatcaataatgtatcagtca 585

                                                                       
Query: 121 gcctgccctagaaagtagcaaagattccacagcatgtctctgtaggcagcatcccttgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gcctgccctagaaagtagcaaagattccacagcatgtctctgtaggcagcatcccttgcc 525

                                                                       
Query: 181 agcctggactgctgtccagctagctgcactctccaggtcaggctgagcccatggctggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agcctggactgctgtccagctagctgcactctccaggtcaggctgagcccatggctggga 465

                                                                       
Query: 241 gctccc--tttttctt--cctcaggtactgccccagtactgagactgccttacccgtagg 296
           ||||||       |||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gctcccaa-----cttcccctcaggtactgccccagtactgagactgccttacccgtagg 410

                                                                       
Query: 297 gctgcatgcaaacctcctactcactctgggctctctgatcctagcaggtggtcagtatgg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gctgcatgcaaacctcctactcactctgggctctctgatcctagcaggtggtcagtatgg 350

                                                                       
Query: 357 gggaatataaattgaggctgagagccaagacatatgaacccctggatccctccatcatcc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gggaatataaattgaggctgagagccaagacatatgaacccctggatccctccatcatcc 290

                                                                       
Query: 417 gctgaggccaaagccactgctggccattcagagagggtctctggatcttctcaggctcgg 476
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 actgaggccaaagccactgctggccattcagagagggtctctggatcttctcaggctcgg 230

                                        
Query: 477 ggctgttctgtgccaccttcccatggttt 505
           ||||||||||||||| |||||||||||||
Sbjct: 229 ggctgttctgtgccagcttcccatggttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 904
Length adjustment: 10
Effective length of query: 495
Effective length of database: 894
Effective search space:   442530
Effective search space used:   442530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)