Query= MSMg01no335_i13.b1 MSMg01no335_i13.b1 CHROMAT_FILE:
MSMg01no335_i13.b1 PHD_FILE: MSMg01no335_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:19 2005
(497 letters)
>mm_chr2_67951336_67952233
Length = 898
Score = 926 bits (479), Expect = 0.0
Identities = 493/498 (98%), Gaps = 1/498 (0%)
Strand = Plus / Plus
Query: 1 tctgtaagaggaagaaatgattaatatgtaagaatggattgctacagaaatctgtggatg 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtaagagaaagaaatgattaatatgtaagaatggattgctacagaaatctgtggatg 260
Query: 61 ggatttggagaatgtaaatcctccctcgtattcttagaatacacaaataagcaactggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatttggagaatgtaaatcctccctcgtattcttagaatacacaaataagcaactggct 320
Query: 121 tttccgctcagaaaggtttgtggatgctgcttactataggaccactgcatctctctatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccgctcagaaaggtttgtggatgctgcttactataggaccactgcatctctctatag 380
Query: 181 tcccacatctcacgactttcatccttaccttggcctctagctttaccctactagttagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccacatctcacgactttcatccttaccttggcctctagctttaccctactagttagtc 440
Query: 241 tcnc-tactcatcatgttctttgaatgtgctctttattttgtctgtgcaaccattatctg 299
| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcatacacatcatgttctttgaatgtgctctttattttgtctgtgcaaccattatctg 500
Query: 300 gataactcctacttgtgtttgaagcctcaacttagcttacttttttctgatttacagtct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gataactcctacttgtgtttgaagcctcaacttagcttacttttttctgatttacagtct 560
Query: 360 ccattcattgttccatcactgcttgaccctaggatgagtagagaatggtggcctctggaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccattcattgttccatcactgcttgaccctaggatgagtagagaatggtggcctctggaa 620
Query: 420 gttttctgtgcctggtctattatactgtccctttttctcaaatactctctttcccagtcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttttctgtgcctggtctattatactgtccctttttctcaaatactctctttcccagtcc 680
Query: 480 actactatgcacttcaaa 497
||||||||||||||||||
Sbjct: 681 actactatgcacttcaaa 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 898
Length adjustment: 10
Effective length of query: 487
Effective length of database: 888
Effective search space: 432456
Effective search space used: 432456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_i13.g1 MSMg01no335_i13.g1 CHROMAT_FILE:
MSMg01no335_i13.g1 PHD_FILE: MSMg01no335_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:20 2005
(519 letters)
>mm_chr2_68088860_68089778
Length = 919
Score = 946 bits (489), Expect = 0.0
Identities = 510/517 (98%)
Strand = Plus / Minus
Query: 3 tatccagttagtcgatcaaaaggaaattagaatattgacaaaagagaacacacaggcatt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tatccagttagtcgatcaaaaggaaattagaatattgacaaaagagaacacacaggcatt 660
Query: 63 aattgctgatatttttctttacattaattcgtgaccaaagggccttcatgtatattccca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aattgctgatatttttctttacattaattcgtgaccaaagggccttcatgtatattccca 600
Query: 123 aagagaatgccgcatatttgcatttcctattgtgacataaattacagcatgggctgaggt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aagagaatgccgcatatttgcatttcctattgtgacataaattacagcatgggctgaggt 540
Query: 183 agtaccatccgtgcagtaggactattatcaccgtcatagagaacagaaagtgggaaatat 242
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agcaccatccgtgcagtaggactattatcaccgtcatagagaacagaaagtgggaaatat 480
Query: 243 tcatgtttgtcggtgtcgaagtaagcctgccatttcaagtccattaattgcagtagaatt 302
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 479 tcatgtttgtcggtgtcgaagtaagcctgccatttcaagtctattaattgcagtagaatt 420
Query: 303 gagcaaattttcgggtactaacactataattaccgagatgaaagtgagtattcaaaggat 362
|||| |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 419 gagcgaatttttggggactaacactataattaccaagatgaaagtgagtattcaaaggat 360
Query: 363 cgttcagaatgcaggctcagtaaactaagctcgtgttttgcgcccctttgtcctagcaga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cgttcagaatgcaggctcagtaaactaagctcgtgttttgcgcccctttgtcctagcaga 300
Query: 423 ctggaagcgggggcttgggccaagtttgcttgtgatttctggattgtttatgagttgtta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctggaagcgggggcttgggccaagtttgcttgtgatttctggattgtttatgagttgtta 240
Query: 483 aaggtgtccgggcccactagtcattcctttgtctctg 519
||||||||| |||||||||||||||||||||||||||
Sbjct: 239 aaggtgtcccggcccactagtcattcctttgtctctg 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
