Query= MSMg01no336_d07.b1 MSMg01no336_d07.b1 CHROMAT_FILE:
MSMg01no336_d07.b1 PHD_FILE: MSMg01no336_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:12 2005
(502 letters)
>mm_chr2_14706375_14707276
Length = 902
Score = 768 bits (397), Expect = 0.0
Identities = 473/507 (93%), Gaps = 18/507 (3%)
Strand = Plus / Minus
Query: 5 gaattcttctgtc-tctgaagcctgagaagtttgtttgtttgtttgtttgtttgtttgtt 63
||||||||||| | | ||||||||| ||| |||||||||||||||||||||||
Sbjct: 815 gaattcttctgacat-tgaagcctgggaa--------gtttgtttgtttgtttgtttgtt 765
Query: 64 ttatatgccataactctttttaaactgtatttgctgtagcaggtgatgaaggc---a--- 117
||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
Sbjct: 764 ttatatgccataactttttttaaactgtatttgctgtagctggtgatgaaggctttatgc 705
Query: 118 --ccaggaagctggacctatacagtaaccaagggtgatggtgacagatcggtttgatcat 175
||||| |||||| |||| |||||||||||||| ||||||||||||| |||||||||||
Sbjct: 704 ctccagggagctggtcctagacagtaaccaagggcgatggtgacagataggtttgatcat 645
Query: 176 ttttatttttttagaatggcttcctctctagcccctatgaaaagatgtagacagatgaac 235
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 644 ttttattattttagaatggcttcctctctagcctctatgaaaagatgtagacagatgaac 585
Query: 236 tattgagtttgggatgttaaaatatgttcccagttctctgttcataatttttcagacacc 295
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tattgagtttgggttgttaaaatatgttcccagttctctgttcataatttttcagacacc 525
Query: 296 aattggtaggaaaactagacttactactctaatgagtatagagtgtgtcttgtattgaga 355
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 524 aattggtaggaaaactagacttactactctaatgagtctagagtgtgtcttgtattgaga 465
Query: 356 tgtcagtcccaaacagtgcagtcgtttttgccatatggcctaggaggtaagcatcctccc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgtcagtcccaaacagtgcagtcgtttttgccatatggcctaggaggtaagcatcctccc 405
Query: 416 ttatcctcatcaaaaataaagaattgaactagtactcaaattcactgaaaggattattat 475
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 404 ttatcctcatcaaaaataaagaattgaactagtactcaaattcattgaaaggatttttat 345
Query: 476 caattgtatcaattatcaatattatca 502
|||||||||||||||| ||||||||||
Sbjct: 344 caattgtatcaattattaatattatca 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_d07.g1 MSMg01no336_d07.g1 CHROMAT_FILE:
MSMg01no336_d07.g1 PHD_FILE: MSMg01no336_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:13 2005
(495 letters)
>mm_chr2_14554053_14554944
Length = 892
Score = 888 bits (459), Expect = 0.0
Identities = 485/495 (97%), Gaps = 3/495 (0%)
Strand = Plus / Plus
Query: 1 catagctgccttctgttttcttccgtgttggttttagtccttactttaggtggtggccag 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 201 catagctgccttctgttttcttccatgttggttttagtccttactttaggtggtagccag 260
Query: 61 ctggtttccaggagctttatgagtaggctatctagggcatctttgtggtccaactcaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtttccaggagctttatgagtaggctatctagggcatctttgtggtccaactcaaag 320
Query: 121 gcttaatttgaaaattatttatccacagttttggtttcatctagtcttaggccaggcctc 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttaatttgaaaattatttttccacagttttggtttcatctagtcttaggccaggcctc 380
Query: 181 aactgtgagctcactgagggatcagttgtatacaagtcacatgatctaaatttaaggaga 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aactgtgagctcactgagggatcagttgtatacaagtcacatgaactaaatttaaggaga 440
Query: 241 ggagccttttctcagaggactgtttccagagaaagaatgaacggacgcaggataggagca 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ggagccttttctcagaggactgtttccagagaaagaatgaacggacacaggataggagca 500
Query: 301 gaagaactgatatctgttctattttgagaatgaatgaacatgttgatgtgttctcagttt 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaa---ctgatatctgttctattttgagaatgaatgaacatgttgatgtgttctcagttt 557
Query: 361 ccttggaatggcttatgaaaataccgagtcttagatatagcttagggaatgccattggaa 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccttgggatggcttatgaaaataccgagtcttagatatagcttagggaatgccattggaa 617
Query: 421 cccttctaggcttatacaaagtattctgtgctcttctctttctaagaacaaatggactgc 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cccttctaggcttatacaacgtattctgtgctcttctctttctaagaacaaatggactgc 677
Query: 481 taatgtgcctacatg 495
|||||||||||||||
Sbjct: 678 taatgtgcctacatg 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 892
Length adjustment: 10
Effective length of query: 485
Effective length of database: 882
Effective search space: 427770
Effective search space used: 427770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
