Query= MSMg01no336_o02.b1 MSMg01no336_o02.b1 CHROMAT_FILE:
MSMg01no336_o02.b1 PHD_FILE: MSMg01no336_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:04 2005
(478 letters)
>mm_chr2_124546476_124547354
Length = 879
Score = 882 bits (456), Expect = 0.0
Identities = 473/482 (98%), Gaps = 7/482 (1%)
Strand = Plus / Minus
Query: 1 gtctctcaaaagttttttattatataccattcctctttgtgtaacaataacccaccatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtctctcaaaagttttttattatataccattcctctttgtgtaacaataacccaccatct 620
Query: 61 gaggcactgctcgcatagaaaatatgccacctctagactctcttgaagtgacatgtaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaggcactgctcgcatagaaaatatgccacctctagactctcttgaagtgacatgtaaca 560
Query: 121 ggcttgaattctggcagctaagaactaagtaagcattgtgctccaggcctgcttgtgaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggcttgaattctggcagctaagaactaagtaagcattgtgctccaggcctgcttgtgaca 500
Query: 181 tcaattctctgtcactttaaaatcaagtcacacacccacactctgacttagtttcttcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcaattctctgtcactttaaaatcaagtcacacacccacactctgacttagtttcttcat 440
Query: 241 tttccaagtttt----aaaaaaaatgctatcttacaagagcgtcgggaaaggcagatcaa 296
|||||||| | |||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 439 tttccaag---taggaaaaaaaaatgctatcttacaagagcgtcaggaaaggcagaacaa 383
Query: 297 ggactggatgcaaagacgttttgaagttaaaaagcaaggcaagtgaactcctcacttctc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggactggatgcaaagacgttttgaagttaaaaagcaaggcaagtgaactcctcacttctc 323
Query: 357 aaatgaacaatgtggcttacgattgattcaacaagcgccctcctttttacaaatgagttc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaatgaacaatgtggcttacgattgattcaacaagcgccctcctttttacaaatgagttc 263
Query: 417 tgcactgatctgagcaggttttgtcttttccagcagactctcacatcattttatgaatgc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgcactgatctgagcaggttttgtcttttccagcagactctcacatcattttatgaatgc 203
Query: 477 ag 478
||
Sbjct: 202 ag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 879
Length adjustment: 10
Effective length of query: 468
Effective length of database: 869
Effective search space: 406692
Effective search space used: 406692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_o02.g1 MSMg01no336_o02.g1 CHROMAT_FILE:
MSMg01no336_o02.g1 PHD_FILE: MSMg01no336_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:04 2005
(374 letters)
>mm_chr2_124375474_124376247
Length = 774
Score = 659 bits (341), Expect = 0.0
Identities = 347/349 (99%)
Strand = Plus / Plus
Query: 1 aactgctttcacttcttaagttaatcttggagtataaagaaactggcccttgccaagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactgctttcacttcttaagttaatcttggagtataaagaaactggcccttgccaagaac 260
Query: 61 catctttgaacaaatgagatgttcaggcttgagcacttgggcacagggactggtcctttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctttgaacaaatgagatgttcaggcttgagcacttgggcacagggactggtcctttg 320
Query: 121 ccacctaattttcttggaagtaaactagggagaacacaggtctcacctaacagcctttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacctaattttcttggaagtaaactagggagaacacaggtctcacctaacagcctttac 380
Query: 181 atgcagctttcgccctcaaaaggatccctctaaggatctggtagccctctatccctcttc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcagctttcgccctcaaaaggatccctctaaggatctggtagccctctatccctcttc 440
Query: 241 cttatataattcttagtatgcagttccttgggggaatggctacatacacagtacacaaac 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttagataattcttagtatgcagttccttgggggaatggctacatacacagtacacaaac 500
Query: 301 actgaacttctctctctctctctctctctctctctctctctctctctct 349
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgaacttctctctctctctctctctctctctctctctctctctctct 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
