BAC Information

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BAC

Clone NameMSMg01-336O16
Chromosome2 (Build37)
Map Location 121,333,199 - 121,333,699
singlet/doubletsinglet
Overlap geneWdr76
Upstream geneZfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a
Downstream geneFrmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336O16.T7 (MSMg01no336_o16.b1)MSMg01-336O16.TJ (MSMg01no336_o16.g1)
ACCAG451821AG451822
length7481,153
length of high quality
(start - end)
505 (41 - 545)---
definitionCHROMAT_FILE: MSMg01no336_o16.b1 PHD_FILE: MSMg01no336_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:07 2005CHROMAT_FILE: MSMg01no336_o16.g1 PHD_FILE: MSMg01no336_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TATCCCCACTACCACACACATAAACTAAAGCATGGGGACCCACACCTGTA
ATCTCAGCTTTAGGCAATCAACACAGGAAGATCAAAACTTCCAGATCATC
CTCTATTACTCTGAGTTACAAGCCAGATTACTTACAACACTGTCGCAAGG
TTAAAAAAAAAAAACTGACCGCCTCAGAAACCGGCGTTACCAACTGAGAT
TTCCCCACACCGACTTTCATCGAGTCAGGACCTTCTTAATCCTTTTCCAA
ACACTCTCTTGACTTGCCATGAATCAAAACAATTATCTTCCCAAAACATT
TACTCTCCATGGAATTCCCTGCTCCATACTACACTGAGCTCAGAACAGGC
AAGTGCTCCACTGCTGAATGGCACCCGAAGCTCAGCAACATAACTTCTTA
GGCTGATGAGTTTGTAATATAAAATTTCTGTGTCAAGTGAAGAGGCACAC
CGGGAGATAATCCTAGCTACTCAGGGAGGAAATAAGTGAACAACCACCAA
AGTAGAGACAAAAACAAACTTGCCTGTTNCACACAGCTCCAAAATAAAAA
TAACCGAAAAAAAGATTTCTGTCTACTTTAGACTTTAAAGCATTTCTGGG
TGTAAGCGTCCTCCCTCTTTTCGTCATTGAAAACCTCCCTACTTTAAGTT
GTCGATTTCCTGGCTCACCCCCCAGGGACCCAGGGAATAATTTATTAA
ATAATAAGAAGGCCNNNNNNNNNNNNCCCNNCATAGCCTTACCCTGCACT
GGGNNNNNNNNNNNNNNCGTATCAANCCACGCCAGANGGGNGNNNNNNGN
NAAANNANNNANNNNNNCGNNNNNNNAGCGCGAACCACTTTTATTGACCC
CACAAAAAAGAGAAACAGAAGCATACCTCGGAGAAAAAAAGTAAAAAGAA
TGAGCTGTTTCTCGGAAGGGGGGGAGAGAGGGGGGAAAGCTAAAAGATCG
AATACACGAAAACCCGAACCAGCCGAGACAACACGATATAACCAACGTAC
AACGAATAATAATACTACACCTAGCTACCGACAAATTTTCTTTGTTTAAA
CCCAAAGGGAGGCGCCTTGANAAGAGCGGAAGAGGAGGGCGGGCAGATTA
TGAACCGATCACACCACGCACACAAACCACGTCAAACCACCATTTTTGAT
AGTATTTAACCACAGACCACAACAGAAAACCACCGCGACGAAAAGACCGC
AGAAAAAAGAATTATTTTCTCCCCCCACCACCCAAAATAACAAGAGAGAA
AGGAAGATGGATAGGCCTTACACGCACCCATTGGCGCTAATTATATATAT
ACCACCCCCCCTATTAACACAAAAAAGAAAATAATATATAACACACCCGT
ACCCCATCAATATCGCAATAATCTGAGTAAGAGAAAATACACAACGAAAA
ACAAACACCCACCGTAACACTCCACAAGGCACAAAGTAAACACAAAACCA
AACCCGCCCCAAACATCAACATTTCCTCACCCCATAACATAATCAATTAT
CAACACCCATACCAAAATAACATTATATCGGCGGTCAAGCATCACCCAAA
GCACATATAGAAATATAATGCACCACACAAACAGGAACCGTACGTAACCG
AGCAAGGAAAAATACCAGCACCACGAGTAATCGAAACACGAAACCACCAA
CTCCGCTTACCCCGACCAAAAATATATTCTCTGCATTAATATATAACAGC
GCATAATCCCACCCCGTTCTACCCTCGCGACATCCCACCGCGACATTAAT
ATAGCCCGCCCCGAAGCTCCGACCAAGAACCGCGATAAAAATAACACCTC
ACCGTCCTGCATCCACTACCTCTCCTCATATCCGATCATCACAACATCCG
CTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_o16.b1 MSMg01no336_o16.b1 CHROMAT_FILE:
MSMg01no336_o16.b1 PHD_FILE: MSMg01no336_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:07 2005
         (505 letters)



>mm_chr2_121332827_121333731
          Length = 905

 Score =  961 bits (497), Expect = 0.0
 Identities = 500/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatccccactaccacacacataaactaaagcatggggacccacacctgtaatct 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gaattctatccccagtaccacacacataaactaaagcatggggacccacacctgtaatct 814

                                                                       
Query: 65  cagctttaggcaatcaacacaggaagatcaaaacttccagatcatcctctattactctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 cagctttaggcaatcaacacaggaagatcaaaacttccagatcatcctctattactctga 754

                                                                       
Query: 125 gttacaagccagattacttacaacactgtcgcaaggttaaaaaaaaaaaactgaccgcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gttacaagccagattacttacaacactgtcgcaaggttaaaaaaaaaaaactgaccgcct 694

                                                                       
Query: 185 cagaaaccggcgttaccaactgagatttccccacaccgactttcatcgagtcaggacctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cagaaaccggcgttaccaactgagatttccccacaccgactttcatcgagtcaggacctt 634

                                                                       
Query: 245 cttaatccttttccaaacactctcttgacttgccatgaatcaaaacaattatcttcccaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cttaatccttttccaaacactctcttgacttgccatgaatcaaaacaattatcttcccaa 574

                                                                       
Query: 305 aacatttactctccatggaattccctgctccatactacactgagctcagaacaggcaagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aacatttactctccatggaattccctgctccatactacactgagctcagaacaggcaagt 514

                                                                       
Query: 365 gctccactgctgaatggcacccgaagctcagcaacataacttcttaggctgatgagtttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gctccactgctgaatggcacccgaagctcagcaacataacttcttaggctgatgagtttg 454

                                                                       
Query: 425 taatataaaatttctgtgtcaagtgaagaggcacaccgggagataatcctagctactcag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 taatataaaatttctgtgtcaagtgaagaggcacaccgggagataatcctagctactcag 394

                                
Query: 485 ggaggaaataagtgaacaacc 505
           |||||||||||||||||||||
Sbjct: 393 ggaggaaataagtgaacaacc 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)