BAC Information

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BAC

Clone NameMSMg01-336P01
Chromosome2 (Build37)
Map Location 120,232,095 - 120,407,043
singlet/doubletdoublet
Overlap geneGanc, Capn3, Zfp106, Snap23
Upstream geneInoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a
Downstream geneLrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336P01.T7 (MSMg01no336_p01.b1)MSMg01-336P01.TJ (MSMg01no336_p01.g1)
ACCAG451838AG451839
length733727
length of high quality
(start - end)		543 (42 - 584)512 (72 - 583)
definitionCHROMAT_FILE: MSMg01no336_p01.b1 PHD_FILE: MSMg01no336_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:09 2005CHROMAT_FILE: MSMg01no336_p01.g1 PHD_FILE: MSMg01no336_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,406,592 - 120,407,043)(120,232,095 - 120,232,606)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATGTTTTTCTGACTGCGTGACTATCACTTCATCGATTAAACCACCGTAT
AGCCCTATATTACATTTCTGAAAACTAATTATCAAAGCTCTTTGTCTACA
ATACAGATAATACCTGGCTCACATTTTAGGTTTGCTGTCTTGCAACATTT
TCATTGTTTTTGAGAAGGGTCTCACGTAGCTCAAGCTGGTTTCAAACCTG
CTATGTAACTGAGAGATACTTTGAATATCTTATCCCTCTGCCTCTATCTC
CCAAATACTGGGATTAGAGGTGGGGGCCACTATATTCAACCTTTGGAAAC
TTGTAATTATAGTAACATGGGGATAGGGATGTCAGTGGGCAGAAGATCAG
GGAAGCTACTAAAACTCCTAGCACTCATTCTGAGAGATGATCAACAAAGA
CTGATCAGGCACAAATGTTAAGTTGAGGTCAGGTACTCTGCTATGAATTA
CACTGACAAGCAGAGAATCAAGTTAACCAGAAATATGTTACTAGATTACA
CTCTTAAAGGTGACAGGTTTTCTCATCTATGTCAACACCTAACAGGCTCT
GAGAGTACGTGCTTGGAAAAGACCTAACGAGTGAACAAGTTATTAGAAAA
ATAGGGAACAGCCCGACGGTGGTGGCACACGTCCTTTAACCCCGTACTTG
TGTAGGCAAGAACGGCGGGATTTCCGAGTTGGA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTACAGAATTCCCAAATTATTCCCACTA
GGCTTTTGAGAACTGAGGGGATAAGGTCATACTCTCTAGGAAATCTAATA
TTTACTATTCAATTATTTAAATTGTGTTTTATTTTAAAATCCTAAGTACT
TTTAAATAATTTTAAATGTGTGTCCTCTCAAAGATAATTAACTTAGTTGA
TTTGAAACTCACATAGAAAGAAATAGATTAAAATTATTACTCCTACCTCT
GCTTTTTCATCCTATTTCTCTTCTCCCTTTAAATAAGCATATTTATTCAT
GTCTTATGTATTCTTCCAGTGTTCTTTGTAACTATATATTCTTATATCAC
CTCTTTGTTTATACCTACAAATAAATTCGCATATACATTGTTCTGTGCCC
CCTCACTGTCTGCTTTGTATCTTAGTCTGGAAAGCTTCTGCTTCAGGACT
TGGAGATTTTCCTCTCTGCTCACAGTATCCCACTGGATAGACGCATTATA
ATTTATTGGGTTCCAGTTCCACTTGTTACAGTCTTGGGCTGCTGTTTCTT
CTTAAACTTTTGCTATGAGAAGTCCCCCATATGAAAAGTTGTGCATGTCA
TTTTCCTATTCACACGAGTGAATTGTAACATGGCTTTCTAGGAATGGCAG
CTGGAAATGTGGTTCTCCCCCTCAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_p01.b1 MSMg01no336_p01.b1 CHROMAT_FILE:
MSMg01no336_p01.b1 PHD_FILE: MSMg01no336_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:09 2005
         (543 letters)



>mm_chr2_120406101_120407043
          Length = 943

 Score =  874 bits (452), Expect = 0.0
 Identities = 452/452 (100%)
 Strand = Plus / Minus

                                                                       
Query: 92  caaagctctttgtctacaatacagataatacctggctcacattttaggtttgctgtcttg 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 caaagctctttgtctacaatacagataatacctggctcacattttaggtttgctgtcttg 884

                                                                       
Query: 152 caacattttcattgtttttgagaagggtctcacgtagctcaagctggtttcaaacctgct 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 caacattttcattgtttttgagaagggtctcacgtagctcaagctggtttcaaacctgct 824

                                                                       
Query: 212 atgtaactgagagatactttgaatatcttatccctctgcctctatctcccaaatactggg 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 atgtaactgagagatactttgaatatcttatccctctgcctctatctcccaaatactggg 764

                                                                       
Query: 272 attagaggtgggggccactatattcaacctttggaaacttgtaattatagtaacatgggg 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 attagaggtgggggccactatattcaacctttggaaacttgtaattatagtaacatgggg 704

                                                                       
Query: 332 atagggatgtcagtgggcagaagatcagggaagctactaaaactcctagcactcattctg 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 atagggatgtcagtgggcagaagatcagggaagctactaaaactcctagcactcattctg 644

                                                                       
Query: 392 agagatgatcaacaaagactgatcaggcacaaatgttaagttgaggtcaggtactctgct 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 agagatgatcaacaaagactgatcaggcacaaatgttaagttgaggtcaggtactctgct 584

                                                                       
Query: 452 atgaattacactgacaagcagagaatcaagttaaccagaaatatgttactagattacact 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atgaattacactgacaagcagagaatcaagttaaccagaaatatgttactagattacact 524

                                           
Query: 512 cttaaaggtgacaggttttctcatctatgtca 543
           ||||||||||||||||||||||||||||||||
Sbjct: 523 cttaaaggtgacaggttttctcatctatgtca 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no336_p01.g1 MSMg01no336_p01.g1 CHROMAT_FILE:
MSMg01no336_p01.g1 PHD_FILE: MSMg01no336_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:09 2005
         (512 letters)



>mm_chr2_120231895_120232806
          Length = 912

 Score =  982 bits (508), Expect = 0.0
 Identities = 511/512 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctacagaattcccaaattattcccactaggcttttgagaactgaggggataaggtcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctacagaattcccaaattattcccactaggcttttgagaactgaggggataaggtcata 260

                                                                       
Query: 61  ctctctaggaaatctaatatttactattcaattatttaaattgtgttttattttaaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctctaggaaatctaatatttactattcaattatttaaattgtgttttattttaaaatc 320

                                                                       
Query: 121 ctaagtacttttaaataattttaaatgtgtgtcctctcaaagataattaacttagttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaagtacttttaaataattttaaatgtgtgtcctctcaaagataattaacttagttgat 380

                                                                       
Query: 181 ttgaaactcacatagaaagaaatagattaaaattattactcctacctctgctttttcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaaactcacatagaaagaaatagattaaaattattactcctacctctgctttttcatc 440

                                                                       
Query: 241 ctatttctcttctccctttaaataagcatatttattcatgtcttatgtattcttccagtg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagttctcttctccctttaaataagcatatttattcatgtcttatgtattcttccagtg 500

                                                                       
Query: 301 ttctttgtaactatatattcttatatcacctctttgtttatacctacaaataaattcgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctttgtaactatatattcttatatcacctctttgtttatacctacaaataaattcgca 560

                                                                       
Query: 361 tatacattgttctgtgccccctcactgtctgctttgtatcttagtctggaaagcttctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatacattgttctgtgccccctcactgtctgctttgtatcttagtctggaaagcttctgc 620

                                                                       
Query: 421 ttcaggacttggagattttcctctctgctcacagtatcccactggatagacgcattataa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaggacttggagattttcctctctgctcacagtatcccactggatagacgcattataa 680

                                           
Query: 481 tttattgggttccagttccacttgttacagtc 512
           ||||||||||||||||||||||||||||||||
Sbjct: 681 tttattgggttccagttccacttgttacagtc 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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