BAC Information

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BAC

Clone NameMSMg01-337G05
Chromosome2 (Build37)
Map Location 181,163,907 - 181,324,982
singlet/doubletdoublet
Overlap geneBtbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b
Upstream geneSlco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1
Downstream geneSamd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337G05.T7 (MSMg01no337_g05.b1)MSMg01-337G05.TJ (MSMg01no337_g05.g1)
ACCAG452175AG452176
length739756
length of high quality
(start - end)		494 (70 - 563)449 (67 - 515)
definitionCHROMAT_FILE: MSMg01no337_g05.b1 PHD_FILE: MSMg01no337_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:45 2005CHROMAT_FILE: MSMg01no337_g05.g1 PHD_FILE: MSMg01no337_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,163,907 - 181,164,400)(181,324,534 - 181,324,982)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTATGTATCCCAAGCTAGTCTTGAACTCAGACAGATTCCCCTGC
TTCTGTTTCTTGAGTGCTGGGACTAAAGGTGTGTGCTGTCACAGTCATTG
ATACTTCAGTTTTGAACAGAAACACTTTGAATAGAAACGGACTTCACAGC
AGTGGTCACTAAAACAGCCTGAATCCACTCTAGTTTCCAACCTGAATATA
CTAATCTGCTAAAGTCAATCACCCTGATTAGCTGACAAGGACCTGTGAAA
TTCTCCACTCAAACTCTCAGGATTCTGTGAACAGTGCAAATATATCCATG
ACTCCAAAGAATGGAGGGTGGCAGCTGAAGGGCCTGTCTTATGCCAGCCA
ATAAGGTGTCTGACCTTTCTGTGAGTGTCACTTTAAACCACAGACCCAAT
AGAACAAGCAGAGTTTAACTCCACGCCAAAGCTGAGGAAACCCCGTTACA
CTGGAGGCTCCAGTCGGTGCCCACACACCCAAACAGAGACAGCAAGTGTA
TTCAAGCCAGGCAGTGAGGCCATGGGACCCAACATCTCCGACAGAAGAAA
CCACGTGCAAACATGAACCCTCAGATGTGAGAGGCATGAATGTGAGGTGT
GGTGCTGCTTGGTGGTGGAGGCTAAATGACAGGCCCCTTGCTCAGCCAGG
TGAGCCTTTACCTTCCACCCAGAGTGTCCTACCTTGGCG

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGGTCTGCTCTTGAGGTTGAAGGGCTTATTTGG
CTTGGGGGAACTTTAAGTCTGGGTAGCTACAGGTCAGCAGCTTGGCCTTT
TCCTCTGCCCAGCTCTCTCTGATGAACCAGTGGAAAGATGAATTCAAGGC
ACACTCAAGGGTGAAGTGTCCAAACTCAGGGTGCTGGCTAGAGTTCCCCA
GCATCTATGGGCTCAAGTACCACTATCAGCGGTGCCAAGGGGTAAGGGGC
TGTGGGCCAGGGAAGAGGAGGCCTGGGGGTGCATCTGGGCAGAGGCCCCC
GGGGCCCCATCCCACACCTGCCCTCCCTGCCCAGGGTGCTATCTCAGATA
GGCTGGCCTTCCCTTGCCCCTTCTGCGAGGCCGCATTCACCTCCAAGACC
CAGCTGGAGAAGCACCGGATATGGAATCACATGGACCACCCCCTACCTGC
CCCCAAGCCTGGCCCAGACAGTCGGTCGGTCACCATCAGCCGGCCTGTTG
GGGACAGCAAGCCCATCGGAGTGAGCAAACCCTGTACTGTTGGCAAACCT
TGGGAGGCTCTAAGCCCATTGGGATCATAATACCATCACAATTATTTAGT
CTATATTATTACCCACCCTTGTTATACCATTATCTCCTTCCCAGTTTTTA
ACGTCCGCGTAGCCTCCCCGTATTTTCCTTTTATAAAATTTTTGTTCTCT
CCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_g05.b1 MSMg01no337_g05.b1 CHROMAT_FILE:
MSMg01no337_g05.b1 PHD_FILE: MSMg01no337_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:45 2005
         (494 letters)



>mm_chr2_181163707_181164600
          Length = 894

 Score =  924 bits (478), Expect = 0.0
 Identities = 490/494 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctagtcttgaactcagacagattcccctgcttctgtttcttgagtgctgggactaaagg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctagtcttgaactcagagagattcccctgcttctgtttcttgagtgctgggactaaagg 260

                                                                       
Query: 61  tgtgtgctgtcacagtcattgatacttcagttttgaacagaaacactttgaatagaaacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtgctgtcacagtcattgatacttcagttttgaacagaaacactttgaatagaaacg 320

                                                                       
Query: 121 gacttcacagcagtggtcactaaaacagcctgaatccactctagtttccaacctgaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacttcacagcagtggtcactaaaacagcctgaatccactctagtttccaacctgaatat 380

                                                                       
Query: 181 actaatctgctaaagtcaatcaccctgattagctgacaaggacctgtgaaattctccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaatctgctaaagtcaatcaccctgattagctgacaaggacctgtgaaattctccact 440

                                                                       
Query: 241 caaactctcaggattctgtgaacagtgcaaatatatccatgactccaaagaatggagggt 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaactctcaggacactgtgaacagtgcaaatatatccatgactccaaagaatggagggt 500

                                                                       
Query: 301 ggcagctgaagggcctgtcttatgccagccaataaggtgtctgacctttctgtgagtgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcagctgaagggcctgtcttatgccagccaataaggtgtctgacctttctgtgagtgtc 560

                                                                       
Query: 361 actttaaaccacagacccaatagaacaagcagagtttaactccacgccaaagctgaggaa 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 actttaaaccacagacccaatagaacaagcggagtttaactccacgccaaagctgaggaa 620

                                                                       
Query: 421 accccgttacactggaggctccagtcggtgcccacacacccaaacagagacagcaagtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accccgttacactggaggctccagtcggtgcccacacacccaaacagagacagcaagtgt 680

                         
Query: 481 attcaagccaggca 494
           ||||||||||||||
Sbjct: 681 attcaagccaggca 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no337_g05.g1 MSMg01no337_g05.g1 CHROMAT_FILE:
MSMg01no337_g05.g1 PHD_FILE: MSMg01no337_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:45 2005
         (449 letters)



>mm_chr2_181324334_181325182
          Length = 849

 Score =  861 bits (445), Expect = 0.0
 Identities = 448/449 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggtctgctcttgaggttgaagggcttatttggcttgggggaactttaagtctgggtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ctggtctgctcttgaggttgaagggcttatttggcttgggggaactttaagtctgggtag 590

                                                                       
Query: 61  ctacaggtcagcagcttggccttttcctctgcccagctctctctgatgaaccagtggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctacaggtcagcagcttggccttttcctctgcccagctctctctgatgaaccagtggaaa 530

                                                                       
Query: 121 gatgaattcaaggcacactcaagggtgaagtgtccaaactcagggtgctggctagagttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gatgaattcaaggcacactcaagggtgaagtgtccaaactcagggtgctggctagagttc 470

                                                                       
Query: 181 cccagcatctatgggctcaagtaccactatcagcggtgccaaggggtaaggggctgtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cccagcatctatgggctcaagtaccactatcagcggtgccaaggggtaaggggctgtggg 410

                                                                       
Query: 241 ccagggaagaggaggcctgggggtgcatctgggcagaggcccccggggccccatcccaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ccagggaagaggaggcctgggggtgcatctgggcagaggcccccggggccccatcccaca 350

                                                                       
Query: 301 cctgccctccctgcccagggtgctatctcagataggctggccttcccttgccccttctgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cctgccctccctgcccagggtgctatctcagataggctggccttcccttgccccttctgc 290

                                                                       
Query: 361 gaggccgcattcacctccaagacccagctggagaagcaccggatatggaatcacatggac 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gaggccgcattcacttccaagacccagctggagaagcaccggatatggaatcacatggac 230

                                        
Query: 421 caccccctacctgcccccaagcctggccc 449
           |||||||||||||||||||||||||||||
Sbjct: 229 caccccctacctgcccccaagcctggccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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