BAC Information

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BAC

Clone NameMSMg01-337G12
Chromosome2 (Build37)
Map Location 153,278,054 - 153,278,669
singlet/doubletsinglet
Overlap gene8430427H17Rik
Upstream geneEG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1
Downstream geneCommd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337G12.T7 (MSMg01no337_g12.b1)MSMg01-337G12.TJ (MSMg01no337_g12.g1)
ACCAG452189AG452190
length724761
length of high quality
(start - end)
616 (72 - 687)244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no337_g12.b1 PHD_FILE: MSMg01no337_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:46 2005CHROMAT_FILE: MSMg01no337_g12.g1 PHD_FILE: MSMg01no337_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTTTGTATCCCAAGCTGGCCTCGAACTCAGAAATCCGCCTGCC
TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCGGGTTT
ATAGCTATCTTATGCTTCAGCCTTTCAAATGCTGGAATTACAGGCCTGAA
CTACCATATTTAACTAATACTATCTTTCTTAAATTGCTCATGCTAAGAGT
TGAGAGACAGTGCTTGGGCAGAGTGCTTGTCTAATTGCATGAGGCCCATG
ATATGATCTTCAGTCCCATTTTTTAAACAAGTATCTCACCATTATTCATT
GGTTGGAAATGATATCTTTCTGTCCTAGTCATCTGCCTTTATGTGCCTCA
CTGCTCTAAGATATCTGTTAAGTCACTGGAGAGACAGTTCACTGGTCCTG
TTCTTACAGAGGACACAGGGATGATTCTCAGTACGCACATGGCTGTTCAC
AATCACCTTGAAACCCAAGTCCTGTCCTCCTTCTTGCCTCCTCAGGCACC
AGCCACATACATGGTATGAACATTCACACAAGCTCTTACACATACACATA
AAATAATAAATATTTTAAAAGGGATCTATTAATATCAGATGAGACCGGCA
TACACCTCAACCCTATAAACTCTCCATCTGCATCATAGTGGGGAGTAAAT
GTGGAGACGTGCTGGGTCCAGCAC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCACCTGGGGACAAGGACCGTGATC
TCGACTCTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTG
TAGCCCTGGCTGTCCTGGAACTCATTTTGTAGACCAGGCTGGCCTCGAAC
TCAGAAATCTACCTGTCTCTGCCTCCCGAGTGCTGGGATCAAAGGCGTGC
GCCACCACGCCCCGCCGTGATCTCGACTCTTAAAGCCTCCGTGTCTCCAT
CTTTGAGGTAACCGTGACTTTTCTTGGTTGGTTTGGTTTGGTTTTTGTTT
TGTTTTGTATTTTGCCCGCGTGACAAAACCCGCTGTGAACTCTGTAGGGC
AGGAAGGTTTATTTTGGATCTCAGTTTCACAAGGCTTGGTGTAACTTTAA
TTATTTCAATCCTTATTTTTAATGATCGTTCTTAAATACTTTACCTCCCT
TGTAGCCCATCCCCCACCAGAGGTATTGGAAAAGAAAGAATATGGGGCAG
GATGGTATGCGCTGTTATGTTCTCCTTTTCTTCTTTTTCTTCATTCGCCC
GTCTTCTTCTCTTTCTTATTTTTTTTTTTCTGGATTCTCTTCTCTATATT
CTTTTTTTTCTTTTTTAAAAATTATCCCCTCTTTCTCCTATTTTTCTCTT
TGCCCTCTTCCTTTTTTTTTCTTCCTCCCTTCTCTGTCTTCTTTCACTGC
CTCTCATCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_g12.b1 MSMg01no337_g12.b1 CHROMAT_FILE:
MSMg01no337_g12.b1 PHD_FILE: MSMg01no337_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:46 2005
         (616 letters)



>mm_chr2_153277854_153278869
          Length = 1016

 Score = 1145 bits (592), Expect = 0.0
 Identities = 610/616 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggcctcgaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggcctcgaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgt 260

                                                                       
Query: 61  gcgccaccacgccgggtttatagctatcttatgcttcagcctttcaaatgctggaattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgccaccacgccgggtttatagctatcttatgcttcagcctttcaaatgctggaattac 320

                                                                       
Query: 121 aggcctgaactaccatatttaactaatactatctttcttaaattgctcatgctaagagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcctgaactaccatatttaactaatactatctttcttaaattgctcatgctaagagtt 380

                                                                       
Query: 181 gagagacagtgcttgggcagagtgcttgtctaattgcatgaggcccatgatatgatcttc 240
           || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaagacagtgctcgggcagagtgcttgtctaattgcatgaggcccatgatatgatcttc 440

                                                                       
Query: 241 agtcccattttttaaacaagtatctcaccattattcattggttggaaatgatatctttct 300
           ||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcccactaaataaacaagtatctcaccattattcattggttggaaatgatatctttct 500

                                                                       
Query: 301 gtcctagtcatctgcctttatgtgcctcactgctctaagatatctgttaagtcactggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcctagtcatctgcctttatgtgcctcactgctctaagatatctgttaagtcactggag 560

                                                                       
Query: 361 agacagttcactggtcctgttcttacagaggacacagggatgattctcagtacgcacatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacagttcactggtcctgttcttacagaggacacagggatgattctcagtacgcacatg 620

                                                                       
Query: 421 gctgttcacaatcaccttgaaacccaagtcctgtcctccttcttgcctcctcaggcacca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgttcacaatcaccttgaaacccaagtcctgtcctccttcttgcctcctcaggcacca 680

                                                                       
Query: 481 gccacatacatggtatgaacattcacacaagctcttacacatacacataaaataataaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccacatacatggtatgaacattcacacaagctcttacacatacacataaaataataaat 740

                                                                       
Query: 541 attttaaaagggatctattaatatcagatgagaccggcatacacctcaaccctataaact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attttaaaagggatctattaatatcagatgagaccggcatacacctcaaccctataaact 800

                           
Query: 601 ctccatctgcatcata 616
           ||||||||||||||||
Sbjct: 801 ctccatctgcatcata 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)