BAC Information

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BAC

Clone NameMSMg01-337I19
Chromosome2 (Build37)
Map Location 25,677,161 - 25,841,025
singlet/doubletdoublet
Overlap geneLcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100
Upstream geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1
Downstream geneLOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337I19.T7 (MSMg01no337_i19.b1)MSMg01-337I19.TJ (MSMg01no337_i19.g1)
ACCAG452299AG452300
length761776
length of high quality
(start - end)		536 (66 - 601)493 (72 - 564)
definitionCHROMAT_FILE: MSMg01no337_i19.b1 PHD_FILE: MSMg01no337_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:58 2005CHROMAT_FILE: MSMg01no337_i19.g1 PHD_FILE: MSMg01no337_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,840,705 - 25,841,025)(25,677,161 - 25,677,653)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCCAGACCATCTCGGCAGTAAGACTGTGGCTCAAATAATTAAGTCAAACC
AAAGCAAGAACATAAAAGAAACACTCCCAAGTTATTTTACTTGCCCACTA
GCAATCTGCTTCTAAAGCCACACAGACACCACATGCAAACTGCAGACTAC
AACGTCCCATGAACACTCAAGACACAGTAAACAAAGCTAGGTAGTATGTA
TGTATGTATAAAAAGGACTATGCTCCATGCCAAGTGGAATTTCTTCCAGA
CTACAGGGGAGGAACAGTATCTGAACACCAGACAATATTATAAACGACAG
ACAGACTAAAAGCCTCTACATGACCACCAGATACAAAACAAAGCACCACA
CAGATGTACAATGGATGGATTTTCTGAGCTTGATAAGAGACACCCATCAA
ACCGAACAGCATCACAGTCAGTGCAAACTGGATGCTTCCTCCAGGTCACA
AGACAAGGGGTCTGCTTTCCCCTGCTATTCCACAGGGCACTGGGGCTCTA
GACAAGGCAGGAAGGAGGTAAGAATGCTCTCTACCCACAGATAACATGTC
TGAAACCATTCAACTAGCAATTGGATTCCTCAGAGCTGCAGAATACAAAG
GCAGAACATCAGACCACCATCCCTGGGCCCCTTTCCTCTCTCTCCTATAT
TCTCAGGGTTGTCCCGTTACCTACCTGGATTTCCACCCCCCCCCCCCGGG
CCCCTTTTCAA

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGTTATCTTTGGCTACCTGAAACCTTG
TCTCAAACAAACTTACAAACAACAAGTCACATTCAAGTAAAAGTTTTTAC
TTGGCCAGATGCTGCAATACCAGGGTAGGCAGCAAAGCAGGTGGCGTGTC
AGACAGCTATCAAACCAGAGATTGGGGTACTTCGGGCTGTTTTGTTCCAG
TCGTAGCAGAGTTGTTATGTAAGTAAAGGTTTGTGTTTGAACCAATCACA
GCCTTGCTTCTTTTCCATAACCCACAGAAGTCCATCTGCTAGACCACCAA
ACATGTGGACTCACCAGGAATACCCCAAGGCTTGTGGCAGGAAAAAGTCC
AGCACAAACAGTCCTGGGTTAGACCAAAGCTTAGGGGCTAAAGCCAGAAA
GGGCTCAACAGCCTGTGTGTAGTAGTATAAGTGATTGAACTGAGAGCTCT
TTTGCTCANAGCAGTTGGGGAAGCAGTGGAGAGTTCAACAGCACTGGAAT
TATACTGCCCTGTCCTAACATCTTTATAGGAAAATGATCCTCAGAAAGGA
TGCTTATATGTCCCACAACCTACCTTTGATATTAACTTGGCGCGGTTTTT
AACAATGCTTTGATACCTGCCTGGGCCCTTGGTGGTCCCTTGGGGAGTCC
TATCCTTCATTCTCCGGGAACCCATTTTATGCTGGTTAGGTATTTATGGA
CGTAAATATCCCCCCCCTAGGGCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_i19.b1 MSMg01no337_i19.b1 CHROMAT_FILE:
MSMg01no337_i19.b1 PHD_FILE: MSMg01no337_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:58 2005
         (536 letters)



>mm_chr2_25840705_25841640
          Length = 936

 Score =  605 bits (313), Expect = e-177
 Identities = 319/321 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtaagactgtggctcaaataattaagtcaaaccaaagcaagaacataaaagaaacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtaagactgtggctcaaataattaagtcaaaccaaagcaagaacataaaagaaacact 262

                                                                       
Query: 61  cccaagttattttacttgcccactagcaatctgcttctaaagccacacagacaccacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaagttattttacttgcccactagcaatctgcttctaaagccacacagacaccacatg 202

                                                                       
Query: 121 caaactgcagactacaacgtcccatgaacactcaagacacagtaaacaaagctaggtagt 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaactgcagactacaacgtgccatgaacactcaagacacagtaaacaaagctaggtagt 142

                                                                       
Query: 181 atgtatgtatgtataaaaaggactatgctccatgccaagtggaatttcttccagactaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 atgtatgtatgtataaaaaggactatgctccatgccaagtggaatttcttccagactaca 82

                                                                       
Query: 241 ggggaggaacagtatctgaacaccagacaatattataaacgacagacagactaaaagcct 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 81  ggggaggaacagtatctgaacaccagacaatgttataaacgacagacagactaaaagcct 22

                                
Query: 301 ctacatgaccaccagatacaa 321
           |||||||||||||||||||||
Sbjct: 21  ctacatgaccaccagatacaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no337_i19.g1 MSMg01no337_i19.g1 CHROMAT_FILE:
MSMg01no337_i19.g1 PHD_FILE: MSMg01no337_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:58 2005
         (493 letters)



>mm_chr2_25676961_25677853
          Length = 893

 Score =  932 bits (482), Expect = 0.0
 Identities = 490/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggttatctttggctacctgaaaccttgtctcaaacaaacttacaaacaacaagtcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggttatctttggctacctgaaaccttgtctcaaacaaacttacaaacaacaagtcaca 260

                                                                       
Query: 61  ttcaagtaaaagtttttacttggccagatgctgcaataccagggtaggcagcaaagcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaagtaaaagtttttacttggccagatgctgcaataccagggtaggcagcaaagcagg 320

                                                                       
Query: 121 tggcgtgtcagacagctatcaaaccagagattggggtacttcgggctgttttgttccagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcgtgtcagacagctatcaaaccagagattggggtacttcgggctgttttgttccagt 380

                                                                       
Query: 181 cgtagcagagttgttatgtaagtaaaggtttgtgtttgaaccaatcacagccttgcttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtagcagagttgttatgtaagtaaaggtttgtgtttgaaccaatcacagccttgcttct 440

                                                                       
Query: 241 tttccataacccacagaagtccatctgctagaccaccaaacatgtggactcaccaggaat 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 tttccataacccacagaagtccatctgctagaccaccaagcatgtggactcaccaggaat 500

                                                                       
Query: 301 accccaaggcttgtggcaggaaaaagtccagcacaaacagtcctgggttagaccaaagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accccaaggcttgtggcaggaaaaagtccagcacaaacagtcctgggttagaccaaagct 560

                                                                       
Query: 361 taggggctaaagccagaaagggctcaacagcctgtgtgtagtagtataagtgattgaact 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 taggggctaaagccagaaagggctcaacagcctgtgtgtagtagtataagtggttgaact 620

                                                                       
Query: 421 gagagctcttttgctcanagcagttggggaagcagtggagagttcaacagcactggaatt 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagagctcttttgctcaaagcagttggggaagcagtggagagttcaacagcactggaatt 680

                        
Query: 481 atactgccctgtc 493
           |||||||||||||
Sbjct: 681 atactgccctgtc 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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