BAC Information

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BAC

Clone NameMSMg01-337K07
Chromosome2 (Build37)
Map Location 105,454,568 - 105,611,740
singlet/doubletdoublet
Overlap genePax6os1, Pax6, Elp4, LOC100043394
Upstream geneCstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, LOC100043391
Downstream geneImmp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337K07.T7 (MSMg01no337_k07.b1)MSMg01-337K07.TJ (MSMg01no337_k07.g1)
ACCAG452366AG452367
length764771
length of high quality
(start - end)		517 (46 - 562)446 (75 - 520)
definitionCHROMAT_FILE: MSMg01no337_k07.b1 PHD_FILE: MSMg01no337_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:05 2005CHROMAT_FILE: MSMg01no337_k07.g1 PHD_FILE: MSMg01no337_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,611,293 - 105,611,740)(105,454,568 - 105,455,013)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTAAACCTCCGAAGAGGCCTGTCATTAAGGGTTAGTAGCAATGA
TGTAAAATACCCTTATCAACATTGGAGCTGTATAGACCCGCCCCTCTTAC
TGCAAGAACTGTTTTAAGGAAGAACTGGCGTTTAGCTGCATTCTTCCTAT
GAATTTCAGTTTTGTAGGGAAAACATTCTAAGGTATATAAAGGGCAAGAT
GACCATAAAGCCTACTCCTTTTTTTAAGATTTTATTTATTTGTCATATAT
ATATATATATATACACATATACATACATACACACACACACACATATGAGA
TGAGTACACTGTAGCTGTCTTCAGAAACACTGAAACACCAAAAGAGGGTA
TTAGGTCCCATTACAGATAGCTGTGAGCTACCATGTTGTTGCTGGGAATT
GAACTCATGACCTCTGAAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCAT
CTCTCCAGCCCATAAAGCCTACTCTTTAACCTTGATTTATCATACACATA
GGGAAACCTTTAGACATGTTCAAAAGGACACATCATGGATGGGCTTTACC
AGCAAGTTCATTTGGAGCCTATGTTAAAAAGTCCTAAAGTGTCTTTTTTC
CCTCCAGGCACTAAAAAAATGGGAAGTGACTTCCTAGAATTTTCCCAAAA
ACTTCTAAAAGGTTTTTTGAATAACTGGTTCCCCCAAAACCACCTGTTAT
CCCCCTATTCTGTT

GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAACTATGGCAGGACAGAAGCCAGAC
TTGCAGGTTATTTTATGCCTTTGCAAGTTCATGGGTGCTTAGTTGAAAGC
CTAACTTTTCCCCTTCCCTGCTCCCAGATTACAATCCCCATAGAGGGTAG
GCACTTTGTCTTCATCCCATGGTTTTGTGAGGGAATATAAAGGCAATCAA
ATCAATGACTAAGTTCTAAGCAACTCTCCCCCTAACATCAGTGTTGGTTG
TTTTCCTTCCCTCTGTCCCCCTAAGCACCATGGTCTTTCCAAACTTACTT
CCCTTGGACACTCGAAGACTCAGACACTGCCCATTTTTCCATGAACCAGG
CACCCACTGAGGGCCATTCCCTTCTTTTCTGGTGTAAATTCTCTTTGTGA
TTTTCATCCCATAAAACAGGTATTATAAGACACTAGCCAGGCGTTGTAGC
ACATGCCTTTAATCCCAGCATTTGGCAGGCAGATAGATCTCTGTGAGTTC
AAGGCCAGCCTGGTCAACACAGTGAGTTCCAGGTCAGCCAGGGCTACATA
CATACAATTGGAGACTTTGTCCCAAATAAAAAAAATAAAGGTTACCTTAA
AAATACCCATATTTTTCCTCCCCGGTATAGGTTACCCCGTTGTGTTTCCC
CCCGTTTCCATCAATCTCTTGGTTCCCACCCTTTTTTTTAAAAGTGGGGT
CCCCACCCTTGTCCCCTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_k07.b1 MSMg01no337_k07.b1 CHROMAT_FILE:
MSMg01no337_k07.b1 PHD_FILE: MSMg01no337_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:05 2005
         (517 letters)



>mm_chr2_105611293_105612209
          Length = 917

 Score =  808 bits (418), Expect = 0.0
 Identities = 437/448 (97%), Gaps = 8/448 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtaaacctccgaagaggcctgtcattaagggttagtagcaatgatgtaaaat 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggaattctgtaaacctctgaagaggcctgtcattaagggttagtagcaatgatgtaaaat 389

                                                                       
Query: 64  acccttatcaacattggagctgtatagacccgcccctcttactgcaagaactgttttaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acccttatcaacattggagctgtatagacccgcccctcttactgcaagaactgttttaag 329

                                                                       
Query: 124 gaagaactggcgtttagctgcattcttcctatgaatttcagttttgtagggaaaacattc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaagaactggcgtttagctgcattcttcctatgaatttcagttttgtagggaaaacattc 269

                                                                       
Query: 184 taaggtatataaagggcaagatgaccataaagcctactcctttttttaagattttattta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 taaggtatataaagggcaagatgaccataaagcctactcctttttttaagattttattta 209

                                                                       
Query: 244 tttgtcatatatatatatatatata--------cacatatacatacatacacacacacac 295
           |||||||||||||||||||||||||        |||||||||||||||||||||||||||
Sbjct: 208 tttgtcatatatatatatatatatatatatatacacatatacatacatacacacacacac 149

                                                                       
Query: 296 acatatgagatgagtacactgtagctgtcttcagaaacactgaaacaccaaaagagggta 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 148 acatatgagatgagtacactgtagctgtcttcagaaacactgaaacaccaaaagagggca 89

                                                                       
Query: 356 ttaggtcccattacagatagctgtgagctaccatgttgttgctgggaattgaactcatga 415
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 88  ttaggtcccattacagatagttgtgagctaccatgttgttgctgggaattgaactcatga 29

                                       
Query: 416 cctctgaaagagcagtcagtgctcttaa 443
           ||||||||||||||||||||||||||||
Sbjct: 28  cctctgaaagagcagtcagtgctcttaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no337_k07.g1 MSMg01no337_k07.g1 CHROMAT_FILE:
MSMg01no337_k07.g1 PHD_FILE: MSMg01no337_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:05 2005
         (446 letters)



>mm_chr2_105454368_105455213
          Length = 846

 Score =  855 bits (442), Expect = 0.0
 Identities = 445/446 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactatggcaggacagaagccagacttgcaggttattttatgcctttgcaagttcatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaactatggcaggacagaagccagacttgcaggttattttatgcctttgcaagttcatgg 260

                                                                       
Query: 61  gtgcttagttgaaagcctaacttttccccttccctgctcccagattacaatccccataga 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcttagttgaaagcttaacttttccccttccctgctcccagattacaatccccataga 320

                                                                       
Query: 121 gggtaggcactttgtcttcatcccatggttttgtgagggaatataaaggcaatcaaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtaggcactttgtcttcatcccatggttttgtgagggaatataaaggcaatcaaatca 380

                                                                       
Query: 181 atgactaagttctaagcaactctccccctaacatcagtgttggttgttttccttccctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgactaagttctaagcaactctccccctaacatcagtgttggttgttttccttccctct 440

                                                                       
Query: 241 gtccccctaagcaccatggtctttccaaacttacttcccttggacactcgaagactcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtccccctaagcaccatggtctttccaaacttacttcccttggacactcgaagactcaga 500

                                                                       
Query: 301 cactgcccatttttccatgaaccaggcacccactgagggccattcccttcttttctggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactgcccatttttccatgaaccaggcacccactgagggccattcccttcttttctggtg 560

                                                                       
Query: 361 taaattctctttgtgattttcatcccataaaacaggtattataagacactagccaggcgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaattctctttgtgattttcatcccataaaacaggtattataagacactagccaggcgt 620

                                     
Query: 421 tgtagcacatgcctttaatcccagca 446
           ||||||||||||||||||||||||||
Sbjct: 621 tgtagcacatgcctttaatcccagca 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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