BAC Information

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BAC

Clone NameMSMg01-337O13
Chromosome2 (Build37)
Map Location 73,368,576 - 73,369,103
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1
Downstream geneChrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172, Lnp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337O13.T7 (MSMg01no337_o13.b1)MSMg01-337O13.TJ (MSMg01no337_o13.g1)
ACCAG452569AG452570
length794781
length of high quality
(start - end)
375 (39 - 413)528 (69 - 596)
definitionCHROMAT_FILE: MSMg01no337_o13.b1 PHD_FILE: MSMg01no337_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:25 2005CHROMAT_FILE: MSMg01no337_o13.g1 PHD_FILE: MSMg01no337_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTC
TCCAGGCTGTACTTCTTTTTTTTTTTTTAAAGATTTATTATTTATTATAT
GTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATC
TTGTTATGGATGGTTGTGAGCTACCATGTGGTTGCTGGGATTTGAACTCT
GGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCTGCTGAGCCATCTCACC
TGCCCCTCCATGCTGATTTCTATGTGGCTGTTGCAGTTGCAATGCTTCCA
ACAGTGAATGAAGCTTTTCTTTTACCCTCACCTCCTCCAGCATTTGTTGC
TCCTTGTTTTGTTGATCTTTGCCATTCTGACTGGGTAAGATGAATCTTAA
AGTTATTTACCCCCCCTTTCCATATTGTCTAGATACAGTGAACTTTTTTG
AGGCATTTCTTAGTTTTTGTTGTTGTTGTCTGTTTGTTTTACTTCATTTG
AGAACTCTCTGTTCAACGCCCATATAAGTGGATAGATCATCTGTTTTAGC
TTGTTTTCCTTGGTTTTGAATCTCCTTGTTCGGTTCTGGGCTTTCCATCT
TCTTGCCATATGCATTTCGTATTTTATAAATTTTCTCTTGTTACGTGGTT
TCTCCTCTCCGTTCCATGCTCTTTTTGTTTTTGTATGCACTCACTCTCTA
CTTTTTCCTACCTGTCTCTCATCTCTTTCTGTTTTTGCACTTTTGTCCCT
CTTTCTTCTTTTTCTCCATTGCTTTGTTCCTTCTTTTTTCCTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGATGGTTACAAACTCCCACTGTTAACTGT
ATTCGTCTAAGGTCTATGCTATATTTGCCTTTTATGTATGTATTTATTTA
ATGTGTACAAGTGGTTTGCCTGCAAATATATCTATCTGTATCATGTGCTT
GCCTGGTGCCACAGAGGCCATAAGAAGGTGTGGGATGCCCTGAGAATGGA
ATTACAGACGGTTGGCAGCTACCACGTAGATGCTGGGAATCTAAGTGTCC
TCTGTTAAGAGCAGCAAGTGCTCTTAACCGCTAAACCATTTTCTCCAGTT
CTGGCACATTGAGTTTGGATCTTTTCCTGGGTTAGCAGTGTGTGGTAAAT
ATTCCCTCTTGTTGCTTGACAACACTGGGAATCCATGAGGAGGGTAAACA
ATCCATACTCTGCTGCATTGTGCCGCCGGGTTGCTAAGCAGTGGGAGCAG
CCAGGGACATTAAGTACACGTTCAGCTCGAGATGGTTTCTGCTGACATTT
GGTCTTTCTATTGTAGACAGAGGCGCTCTGAACCTATTCTGCTTCTTGTT
TCATGACTCCCATCTTGGGAGCCACTCTAACTCCTAATCCAGTGCCTTTG
GAACCTCCCACCCCCTTATAACCAGGACTTTTATTTTGTTTACCCTTCTC
CCTGAATCAAGGGGAGCTTCACACACCCCAATAAAGGAAGCTTAACCGGC
CTCCTTGAAGTTCTCCCACGGAAAACTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_o13.g1 MSMg01no337_o13.g1 CHROMAT_FILE:
MSMg01no337_o13.g1 PHD_FILE: MSMg01no337_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:25 2005
         (528 letters)



>mm_chr2_73368376_73369303
          Length = 928

 Score =  967 bits (500), Expect = 0.0
 Identities = 521/528 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggatggttacaaactcccactgttaactgtattcgtctaaggtctatgctatatttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggatggttacaaactcccactgttaactgtattcgtctaaggtctatgctatatttgc 260

                                                                       
Query: 61  cttttatgtatgtatttatttaatgtgtacaagtggtttgcctgcaaatatatctatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttatgtatgtatttatttaatgtgtacaagtggtttgcctgcaaatatatctatctg 320

                                                                       
Query: 121 tatcatgtgcttgcctggtgccacagaggccataagaaggtgtgggatgccctgagaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tatcatgtgcttgcctggtgccacagaggccataagaaggtgtgggatgccctgataatg 380

                                                                       
Query: 181 gaattacagacggttggcagctaccacgtagatgctgggaatctaagtgtcctctgttaa 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattacagacggttgggagctaccacgtagatgctgggaatctaagtgtcctctgttaa 440

                                                                       
Query: 241 gagcagcaagtgctcttaaccgctaaaccattttctccagttctggcacattgagtttgg 300
           |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 441 gagcagcaagtgctcttaaccgctgaaccattttctccagttctggcgcattgagtttgg 500

                                                                       
Query: 301 atcttttcctgggttagcagtgtgtggtaaatattccctcttgttgcttgacaacactgg 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 501 atcttttcctgggttagcagtgtgtggtaaatattccttcttgttgcttgacaacacagg 560

                                                                       
Query: 361 gaatccatgaggagggtaaacaatccatactctgctgcattgtgccgccgggttgctaag 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 gaatccatgaggagggtaaacaatccatactatgctgcattgtgccgccgggttgctaag 620

                                                                       
Query: 421 cagtgggagcagccagggacattaagtacacgttcagctcgagatggtttctgctgacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtgggagcagccagggacattaagtacacgttcagctcgagatggtttctgctgacat 680

                                                           
Query: 481 ttggtctttctattgtagacagaggcgctctgaacctattctgcttct 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggtctttctattgtagacagaggcgctctgaacctattctgcttct 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)