BAC Information

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BAC

Clone NameMSMg01-338C14
Chromosome2 (Build37)
Map Location 107,143,623 - 107,302,755
singlet/doubletdoublet
Overlap genenone
Upstream geneDcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338C14.T7 (MSMg01no338_c14.b1)MSMg01-338C14.TJ (MSMg01no338_c14.g1)
ACCAG452762AG452763
length705706
length of high quality
(start - end)		585 (51 - 635)631 (76 - 706)
definitionCHROMAT_FILE: MSMg01no338_c14.b1 PHD_FILE: MSMg01no338_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:44 2005CHROMAT_FILE: MSMg01no338_c14.g1 PHD_FILE: MSMg01no338_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,302,306 - 107,302,755)(107,143,623 - 107,144,254)
sequence
NTTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACCTGTACTTATAAATATTTATTTTCTATTTTAAAAATAT
AATGTACAATATTTGAACATGTGCACCTTCTACAAGCTACACACTAGTCT
TGTGTCTGCTATGTGTGTAATCTTTGATGTATAATTCCCATTTGAAAGCA
GACACTATTCAATCATTGTAAATAGTTTTAGATTTGGAACATACAGTTGA
TAAGATTGTGGTCTAAAACTTCTAGGTGTTTTCTGAGCTTCTGAGTGTTG
TTCATAATTTAAACAATTTATTAACTAAAATAGTCAGGTGTGGTGACGCA
TGCCTTTAATCCCAGCACTCTGGAGGCAGAGGCAGGCAGATTTCTGAGTT
CGAGGCCAGCCTGCTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTATAC
AGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAAAACTAAAATA
AACTCAGTTTAAGTTATTCTACCAAATGTAATAGGTCAGAATCGTAAACA
AAACCAAATTAACTCAATAATGCTCAAAATTGCCTAGAATTTTCTATTTA
ATAAGTAAACTTAATCTATAAATTGAATATTGTCATAACAAAAATAACCA
AAATAGAGTTTTATAATACACAACCACCTTGGATGAAATCAGAAATATTT
CTGTA

NCCCATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATACTTTGTATTTTGATCATATTT
CTTCCTCTTCTATCTCTTTCTGGATGTATCCCCCATTCCATACTGCCCAA
TTTGTGTCCACACTAAAAAATAAAATAAAGTCAAGTAGTGTTACCTATCT
ATCTATTCTTGGCTATATGTCACTCACTGGAATGTGTTTGGCCTACCAGG
AGCAGCCCTTAAAGAAACTCACTGTTCTCCCACAAGTTTTAAATTGAAGG
TTGATTGTTTTAATAATAAACTGAAGTTTGGGAAGGTAGCTAGAGATTCT
AAGCCTCACCCTACCTTACTAACTTCAGGCCTATGTCTAGCTAGTTATTT
TAAGAAATTAATATATTTAGACGTTACAATCTATAATTTGAACTGTTTAT
TTGGATTGAGACTTAGGCTAGAAATAGTGACTTATTTATTCATTCTTTCT
GAGACTATAATGCAATCCCTCTCTAGTTTTGTACCCCCATTCCTTGATTT
TCAATATTTTATTTAAATTGGTAGATTTGGTCTTAAGCATTTTCTCTTTC
TAACAAATTAAAAGGCACTTAGGTGTAGATAGATTGATGGCAGGCACCTT
CTTTTGTAATATTTGGTTTTGGTCAATTTTTAAGCTGACTAGAGTAACTA
TGAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_c14.b1 MSMg01no338_c14.b1 CHROMAT_FILE:
MSMg01no338_c14.b1 PHD_FILE: MSMg01no338_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:44 2005
         (585 letters)



>mm_chr2_107302253_107303237
          Length = 985

 Score =  717 bits (371), Expect = 0.0
 Identities = 431/451 (95%), Gaps = 2/451 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacctgtacttataaatatttattttctattttaaaaatataatgtacaatatt 63
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggaattcacctgaatttataaatatttattttctattttaaaaatataatgtacaatatt 444

                                                                       
Query: 64  tgaacatgtgcaccttctacaagctacacactagtcttgtgtctgctatgtgtgtaatct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgaacatgtgcaccttctacaagctacacactagtcttgtgtctgctatgtgtgtaatct 384

                                                                       
Query: 124 ttgatgtataattcccatttgaaagcagacactattcaatcattgtaaatagttttagat 183
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 383 ttgatgtataattcccatttgaaagcagacgttattcaatcattgtaaatagttttagat 324

                                                                       
Query: 184 ttggaacatacagttgataagattgtggtctaaaacttctaggtgttttctgagcttctg 243
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 323 ttggaacatacagttgataagattgtggtctaaaacttctaggtattttctgagcttctg 264

                                                                       
Query: 244 agtgttgttcataatttaaacaatttattaactaaaatagtcaggtgtggtgacgcatgc 303
           |||||||||||||||||||||||||||  ||||||||||| |||| |||||| ||||  |
Sbjct: 263 agtgttgttcataatttaaacaatttaaaaactaaaatagccaggcgtggtggcgcacac 204

                                                                       
Query: 304 ctttaatcccagcactctggaggcagaggcaggcagatttctgagttcgaggccagcctg 363
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 203 ctttaatcccagcacactggaggcagaggcaggcagatttctgagttcaaggccagcctg 144

                                                                       
Query: 364 ctctacagagtgagttccaggacagccagagctatacagagaaaccctgtctcaaaaaac 423
            |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 143 gtctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctcaaaaaac 84

                                          
Query: 424 caaaaaaaaa-aaaaaaaaactaaaataaac 453
           |||||||||| |||||||||| |||| ||||
Sbjct: 83  caaaaaaaaacaaaaaaaaacaaaaa-aaac 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no338_c14.g1 MSMg01no338_c14.g1 CHROMAT_FILE:
MSMg01no338_c14.g1 PHD_FILE: MSMg01no338_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:44 2005
         (631 letters)



>mm_chr2_107143423_107144454
          Length = 1032

 Score = 1183 bits (612), Expect = 0.0
 Identities = 627/632 (99%), Gaps = 1/632 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catactttgtattttgatcatatttcttcctcttctatctctttctggatgtatccccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catactttgtattttgatcatatttcttcctcttctatctctttctggatgtatccccca 260

                                                                       
Query: 61  ttccatactgcccaatttgtgtccacactaaaaaataaaataaagtcaagtagtgttacc 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ttccatactgcccaatttgtgtccacactaaaaaataaaataaagacaagtagtgttacc 320

                                                                       
Query: 121 tatctatctattcttggctatatgtcactcactggaatgtgtttggcctaccaggagcag 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 tatctatctattcttggctatatgtcactcactggaatgtgtttggtctaccaggagcag 380

                                                                       
Query: 181 cccttaaagaaactcactgttctcccacaagttttaaattgaaggttgattgttttaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccttaaagaaactcactgttctcccacaagttttaaattgaaggttgattgttttaata 440

                                                                       
Query: 241 ataaactgaagtttgggaaggtagctagagattctaagcctcaccctaccttactaactt 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaactgaagtttgggaaagtagctagagattctaagcctcaccctaccttactaactt 500

                                                                       
Query: 301 caggcctatgtctagctagttattttaagaaattaatatatttagacgttacaatctata 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 caggcctatgtctagctagttattttaagaaattaatatatttagacattacaatctata 560

                                                                       
Query: 361 atttgaactgtttatttggattgagacttaggctagaaatagtgacttatttattcattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttgaactgtttatttggattgagacttaggctagaaatagtgacttatttattcattc 620

                                                                       
Query: 421 tttctgagactataatgcaatccctctctagttttgtacccccattccttgatttt-caa 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 tttctgagactataatgcaatccctctctagttttgtacccccattccttgatttttcaa 680

                                                                       
Query: 480 tattttatttaaattggtagatttggtcttaagcattttctctttctaacaaattaaaag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattttatttaaattggtagatttggtcttaagcattttctctttctaacaaattaaaag 740

                                                                       
Query: 540 gcacttaggtgtagatagattgatggcaggcaccttcttttgtaatatttggttttggtc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcacttaggtgtagatagattgatggcaggcaccttcttttgtaatatttggttttggtc 800

                                           
Query: 600 aatttttaagctgactagagtaactatgaagt 631
           ||||||||||||||||||||||||||||||||
Sbjct: 801 aatttttaagctgactagagtaactatgaagt 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1032
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1022
Effective search space:   634662
Effective search space used:   634662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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