BAC Information

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BAC

Clone NameMSMg01-338G20
Chromosome2 (Build37)
Map Location 52,375,576 - 52,376,064
singlet/doubletsinglet
Overlap geneCacnb4
Upstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a
Downstream geneOTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338G20.T7 (MSMg01no338_g20.b1)MSMg01-338G20.TJ (MSMg01no338_g20.g1)
ACCAG452958AG452959
length755741
length of high quality
(start - end)
530 (64 - 593)62 (70 - 131)
definitionCHROMAT_FILE: MSMg01no338_g20.b1 PHD_FILE: MSMg01no338_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:03 2005CHROMAT_FILE: MSMg01no338_g20.g1 PHD_FILE: MSMg01no338_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
GTTAGTATCCCTCAAAGCTGCAGAGAAATGACGAGCATGGGAATCAAGGT
GAGTTCCCTCCTACCTAGCATTCGTGCTACAACCAGCCTATTTTCCATTC
CTCCCATCTTGTTGTTTATAATGATACTATTCACAGAACGGGTAGAACTT
CTCCAGGAAACTAGCACTCATCTCCTCTCCCTTAACTCAAAGCACTGGTT
ATTAGAATACGACCATTTAGTAGCATCAAGATGGGAAACAAACTTTTAAT
ACACGGACCTCTATGTATATCTCAGATCCAAATACTAGTAGATCTCAAAC
CAGTGAGAGTTAATTGATTGTCAACTTGATAGGATCTAGAAGCACCAAGG
AGACAAACTTCTATGAGGGGATGTCTGTGAGGGGATTTCTAGATTTAGCT
AACTGAGGTAGGAAGACCTTCTCTAAATGTGGAGAGCACTAGTCCACAAG
TCCCAGAATAAATAGAAATGAAAAGCTAGTCAGGGTACCATTATTTGGGG
AAATTTTATTAAGCTGGTATAATTTAGTTTTTCTCTATCAGTTTCAAAAT
TAGCAAGAGCATAATTTAGGAGTAGAAAAGGTTTTTAATAATACCATATG
AAATTATCAGATAGAAACCACTCTTACTAAAAGGCTCAGCCTTTTGCGTT
TAGAAATACAAGAAGTAAAAGATCCTTTTACTGCGGGCTTCTTTTTTTGT
TTGAG
ACAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATAAAAATGAAAGCACAGCATATTCAAATT
TATGGGACACAATGAAAGCAATGCTAGGAGAAAAATACACAGGTTGAAGT
GCCTTNNCTACAAATCAAATAAGAAAAGAATAGAAATGGAGAGATCTCAT
ACTANNCACTTACCAACACACGGAAAGCTCTAAAACAAAAGAACAANNAA
CCNCCGAAAAGTTACAATATAAAAAATNGNNNNNNNNNATAACNAAAAAA
AAATAAACAAAAGAAAGNNNNNNNNTAAATNNNNTNNNNNNNNNNNNNNN
NNNNCCCCCTCCCTTTCTTTTTCTAGGNNTAAAAGACGNNACTAAAAAAT
AGAAACTGGGGATGGGCGGGGCGGGGGAGCGACGGGGGAGGTGGAGGAGA
GAAAANAANNCCNNNCCCATAGAATTCCNNNCCCCNNNNCCAGAGTGGTT
TATTGGNCCNNNNTTCTTTNNNNNNNCGNNNTTTTTATATTACCCCNNNN
NNNNNNNNNNNNNNNTTTGGTTNNTNGCAANNGGGGNGAAGAATAAACCC
CNNNNAAAAAAAANNNNNNNNNAANAATATATTATTTTTTTTTTTTGGGA
GGGGGTCGCAAGTAAGNNNNNNNNTAAAAAAAAAAAAAATATAAATAAAT
ATTNNNTAATTTATATTTTATTAATATNNNNNNNNNNTNTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_g20.b1 MSMg01no338_g20.b1 CHROMAT_FILE:
MSMg01no338_g20.b1 PHD_FILE: MSMg01no338_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:03 2005
         (530 letters)



>mm_chr2_52375576_52376505
          Length = 930

 Score =  872 bits (451), Expect = 0.0
 Identities = 482/497 (96%), Gaps = 8/497 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   agctgcagagaaatgacgagcatgggaatcaaggtgagttccctcctacctagcattcgt 62
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 489 agctgcagagaaatgacgagcatgggaatcaaggtgagttccatcctacctagcattcgt 430

                                                                       
Query: 63  gctacaaccagcctattttccattcctcccatcttgttgtttataatgatactattcaca 122
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gctacaaccagcccattttccattcctcccatcttgttgtttataatgatactattcaca 370

                                                                       
Query: 123 gaacgggtagaacttctccaggaaactagcactcatctcctctcccttaactcaaagcac 182
           |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 369 gaacggttagaacttctccaggaaaccagcactcatctcctctcccttaactcaaagcac 310

                                                                       
Query: 183 tggttattagaatacgaccatttagtagcatcaagatgggaaacaaacttttaatacacg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tggttattagaatacgaccatttagtagcatcaagatgggaaacaaacttttaatacacg 250

                                                                       
Query: 243 gacctctatgtatatctcagatccaaatactagtagatctcaaaccagtgagagttaatt 302
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gacctctagggatatctcagatccaaatactagtagatctcaaaccagtgagagttaatt 190

                                                                       
Query: 303 gattgtcaacttgataggatctagaagcaccaaggagacaaacttctatgaggggatgtc 362
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 189 gattgtcaacttgataggatctagaagcaccaaggagacaaacttccatgaggggatgtc 130

                                                                       
Query: 363 tgtgaggggatttctagatttagctaactgaggtaggaagaccttctctaaatgtggaga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgtgaggggatttctagatttagctaactgaggtaggaagaccttctctaaatgtggaga 70

                                                                       
Query: 423 gcactagtccacaagtcccagaataaatagaaatgaaaagctagtcagggtaccattatt 482
           ||||        ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  gcac--------aagtcccagaataaatagaaatgaaaagctagtcagggtaccattatt 18

                            
Query: 483 tggggaaattttattaa 499
           |||||||||||||||||
Sbjct: 17  tggggaaattttattaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)