XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AACATCTTCCACTTAGTAGCTATACAACCTTGGGTAATTTATTTACTCTT
TGTATGATTCAGTTCCTTACTAGTTAAAACAGGAACGATCACTTCCTCCT
CTCATAGGAATTACTTCCTCATGCATAATTAGGATCTGTAAACATTTATA
ACTGTGCCTACATCTGATAGATGGCTATCAATAGTCATCAGCATGATAAC
TGTGACTCAAGGACGGGGTTATTTCCTGCTAACCATGCCTTCAGATGATA
CCACTTTGGAAATGGCTATGTCTCCCTTGAAACATTCTATTTCCAGATCT
TCACAAAGCTATCTTGCTTTGGTCCTTAGTCCTGAACTGAGGCAAAAACC
ACTAATGGTCTTTGAACTCTGTTAGCTCCTTGTCTCATGTGTCCCAAACA
GAATTGGGGTCCATCATCATAACCAATTTGTAGCATATGTTGTATGATTT
TATTGGTTTCTGATCCCCCCCAGTAATAAGTGTTCAAACCCATACTTTTA
ACCTACTTGGAGAAGACTTCTGACCATCCCATTCCAGCTAGGTTCTACTT
CCATAGAAACTATATTGCATCCATTAATTACCTAGTGACCCTCACTCCCC
ACCAAAGAGCANAAATATGCAAGAATGGATAAAAATTTATCTCTATAATT
AGTATCTTCGTATGGTTCATCAGTAAACTACATGTATTTGA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAGAAAGTATTTAATTTCTTTCATTATTT
CTTCTTTGATCCAGTGGTTACTGAGTAGAAACATGTTCAGTTTCTGTGAG
TGTGTAGACTTTCTATTGTTTCTGTTGTTGTTGAAGTTCAGTTTTGATCC
ATGGTGATCTGATAAGATGCATAGGGTTATTTCAACCGTCTTGTATCTGT
TAAGGCTTGCTTTAATCAATTACATGGTCAGGTTTGGAGAGGGTTCCAGG
AGGTGCTGAGAAGAAGGTATATTCTTTTGTGTTTGGGTAAAATGTTCTGT
AGATATCTGTTCATTTGATTCAGACCCTCGGTTAGTTTAATTTTTCTGTT
TAGTTTGTGTCTTGATGACCTGTCCTTTGGTGAGAGTGGGGTACTGATGT
CTTCCACTATTCATGTATGGTATTCAGTGTGTGATTTAAGCTTTTGCAAT
GTTTTTGTTACAGAATTGGGTGTTCTTGCATTAGGGGCATATATATTTAA
AATTGAGATGTCATCTTGGTGGATTTTTCCTTTGATAAGTATCAAGTGTC
CTTAACCATCTCTTTTTGATTAATTTTGGTTGGAAGTGTATTTTATTAGA
TATTAACATGGCTACTCCAGCTTTGCTTCTTGAGACTGTTTGCATGGAAA
CCTTGTTTTCAGGCCCTTACTCTAAAATAATGT

Query= MSMg01no338_h13.b1 MSMg01no338_h13.b1 CHROMAT_FILE:
MSMg01no338_h13.b1 PHD_FILE: MSMg01no338_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:06 2005
         (674 letters)



>mm_chr2_78236401_78237476
          Length = 1076

 Score = 1243 bits (643), Expect = 0.0
 Identities = 664/672 (98%), Gaps = 2/672 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacatcttccacttagtagctatacaaccttgggtaatttatttactctttgta 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 gaattcaacatcttccaattagtagctatacaaccttgggtaatttatttactctttgta 931

                                                                       
Query: 65  tgattcagttccttactagttaaaacaggaacgatcacttcctcctctcataggaattac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 tgattcagttccttactagttaaaacaggaacgatcacttcctcctctcataggaattac 871

                                                                       
Query: 125 ttcctcatgcataattaggatctgtaaacatttataactgtgcctacatctgatagatgg 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ttcctcatgcatgattaggatctgtaaacatttataactgtgcctacatctgatagatgg 811

                                                                       
Query: 185 ctatcaatagtcatcagcatgataactgtgactcaaggacggggttatttcctgctaacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ctatcaatagtcatcagcatgataactgtgactcaaggacggggttatttcctgctaacc 751

                                                                       
Query: 245 atgccttcagatgataccactttggaaatggctatgtctcccttgaaacattctatttcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 atgccttcagatgataccactttggaaatggctatgtctcccttgaaacattctatttcc 691

                                                                       
Query: 305 agatcttcacaaagctatcttgctttggtccttagtcctgaactgaggcaaaaaccacta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 agatcttcacaaagctatcttgctttggtccttagtcctgaactgaggcaaaaaccacta 631

                                                                       
Query: 365 atggtctttgaactctgttagctccttgtctcatgtgtcccaaacagaattggggtccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 atggtctttgaactctgttagctccttgtctcatgtgtcccaaacagaattggggtccat 571

                                                                       
Query: 425 catcataaccaatttgtagcatatgttgtatgattttattggtttctgat--ccccccca 482
           |||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||
Sbjct: 570 catcataaccaatttgtagcatttgttgtatgattttattggtttctgatccccccccca 511

                                                                       
Query: 483 gtaataagtgttcaaacccatacttttaacctacttggagaagacttctgaccatcccat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtaataagtgttcaaacccatacttttaacctacttggagaagacttctgaccatcccat 451

                                                                       
Query: 543 tccagctaggttctacttccatagaaactatattgcatccattaattacctagtgaccct 602
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 450 tccagctaggttctacttccatggaaactatattgcatccattaattacctagtgaccct 391

                                                                       
Query: 603 cactccccaccaaagagcanaaatatgcaagaatggataaaaatttatctctataattag 662
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 390 cactccccaccaaagagcaaaaatatgcaagaatggataaaaatgtatctctataattag 331

                       
Query: 663 tatcttcgtatg 674
           ||||||||||||
Sbjct: 330 tatcttcgtatg 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1076
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1066
Effective search space:   707824
Effective search space used:   707824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)