ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATCTGTTTTTCTGACTTGACACAGGAAAAAGACTCTGTAACTGGCCTA
ATTTGTTTTAAATCCAGATTGTGCTATTACTGTTTGCTTAAAAATAACCA
TCCTTGCTGTATTTTCCAGAGGTTCCATGATTTCTTAGATTTTTTTTAAT
ACAGAGCATCTTTAAAATATTAAATGTCATTGTATAAAATAACAGCAAGA
AGGATGAAGGTTTCTTTATTAGAGGTTTAAGCCTTCAAATAAATTTAAGA
ATAAAATAATAATTTTATTTTGTATTGAGTAGTAAAAATAAAAGTTTTAA
GTTCTACACATTAAAATATAATCTTCTAGTTAATATTTCAGTAAGCCGTT
AAGTGACTCTTTCTTTCTTTCTGTCTTTTTTTTTTTTTTTTGACAAAGTA
CTACATTCCTTGTAAAAAATCCGGGTAATGTGAAATTGTAAAAAGGATAA
AATTAAAATCACCCATAATCTTGTCACATGCTACAGCTTCTTGCTGAAAC
ATCTGTACATCTATGTTGCAGTATGTTTCTTCAAAAAGCATTTTTATATT
TGAAAGTATATATGTAAGAAGCAATTTGAAATGTTTTCGTAGCTACAATC
TTTTGGGACAATTTTACCTAATAAATTTTATAGATAATTTACACTTAAAT
TATCTAAATCCTGTATTTTATCAGCAATAATGGGACAAN

CAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGAAGAGGTACCAGAAAAAGTGTAAGAGCCAGTGG
GGAGAGAAGACAACAAGGAAACAGGGCCTTCTAGACACTACTAGACTGGC
ACAAAATTAATTCACAGAGACTAGCACAATGTTCAGGTCCTTCACAGGTC
TAAGACAGATGGAGTCCTAGTGCTGAGCAGGGAAGTAGACACAAGCCTCC
ATCCCTAACCCAGAAGCTAATTCCAACTGTTAGCAAGTGACAAAGGAAAA
ATTAGTTTTCTTTAATGGAGACTTACTGGTCTTGCAAACTTTATATGCTC
CAGTACAGAGGAACACCTGGGCCAAGAAGTGAGAGTGGGTGGTTAGGGGA
GCAGGGCAGGGGGTGGGTATAGGGAACTTTCGGGATAGCATTTGAAATGG
AAATAAAGAAAATATCTATTAAGAATTTTATTAAATCTTAAAGAACATGG
AGACCTTACTGGGTAGCCAAACTGTGCTTAAAGGCACATTCTCAGCATTA
AGTGGCCGAGAGAATGAAAGCAACGCTATTTTTTAGAAGGGTGTTTTATT
TTATCCCAATGCCTTTGTTTTGGCCTTTCTTTGCTTTTGGTTACTGATGG
TTTTGCCTCAAACGGTATTGCCTCTCCCGAATTTAATTTTTAAAGGGGCC
CTCCCGGTGTTTGCGACGCATTACGTGGCGTGTTTAACTTTN

Query= MSMg01no338_i04.b1 MSMg01no338_i04.b1 CHROMAT_FILE:
MSMg01no338_i04.b1 PHD_FILE: MSMg01no338_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:09 2005
         (662 letters)



>mm_chr2_12416153_12417214
          Length = 1062

 Score = 1212 bits (627), Expect = 0.0
 Identities = 654/667 (98%), Gaps = 10/667 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatctgt-ttttctgacttgacacaggaaaaagactctgtaactggcctaatttg 63
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattcatctgtatttt-tgacttgacacaggaaaaagactctgtaactggcctaatttg 255

                                                                       
Query: 64  ttttaaatccagattgtgctattactgtttgcttaaaaataaccatccttgctgtatttt 123
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 256 ttttaaatccagattgtgctattactatttgcttaaaaataaccatccttgctgtatttt 315

                                                                       
Query: 124 ccagaggttccatgatttcttagatttttttt-aatacagagcatctttaaaatattaaa 182
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 316 ccagaggttccatgatttcttagatttttttttaatacagagcatctttaaaatattaaa 375

                                                                       
Query: 183 tgtcattgtataaaataacagcaagaaggatgaaggtttctttattagaggtttaagcct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgtcattgtataaaataacagcaagaaggatgaaggtttctttattagaggtttaagcct 435

                                                                       
Query: 243 tcaaataaatttaagaataaaataataattttattttgtattgagtagtaaaaataaaag 302
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 436 tcaaataaatttaagaataaaataataattttattcagtattgagtagtaaaaataaaag 495

                                                                       
Query: 303 ttttaagttctacacattaaaatataatcttctagttaatatttcagtaagccgttaagt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttttaagttctacacattaaaatataatcttctagttaatatttcagtaagccgttaagt 555

                                                                       
Query: 363 gactctttctttctttctgtctttttttttttttttt-------gacaaagtactacatt 415
           |||||||||||||||||||||||||||||||||||||       ||||||||||||||||
Sbjct: 556 gactctttctttctttctgtctttttttttttttttttttttttgacaaagtactacatt 615

                                                                       
Query: 416 ccttgtaaaaaatccgggtaatgtgaaattgtaaaaaggataaaattaaaatcacccata 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ccttgtaaaaaatccgggtaatgtgaaattgtaaaaaggataaaattaaaatcacccata 675

                                                                       
Query: 476 atcttgtcacatgctacagcttcttgctgaaacatctgtacatctatgttgcagtatgtt 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atcttgtcacatgctacagcttcttgctgaaacatctgtacatctatgttgcagtatgtt 735

                                                                       
Query: 536 tcttcaaaaagcatttttatatttgaaagtatatatgtaagaagcaatttgaaatgtttt 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tcttcaaaaagcatttttatatttgaaagtatatatgtaagaagcaatttgaaatgtttt 795

                                                                       
Query: 596 cgtagctacaatcttttgggacaattttacctaataaattttatagataatttacactta 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 cgtagctacaatcttttgggacaattttacctaataaattttatagataatttacactta 855

                  
Query: 656 aattatc 662
           |||||||
Sbjct: 856 aattatc 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)