Query= MSMg01no338_j18.b1 MSMg01no338_j18.b1 CHROMAT_FILE:
MSMg01no338_j18.b1 PHD_FILE: MSMg01no338_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:16 2005
(339 letters)
>mm_chr2_174473059_174473798
Length = 740
Score = 642 bits (332), Expect = 0.0
Identities = 338/340 (99%), Gaps = 1/340 (0%)
Strand = Plus / Minus
Query: 1 actgatggatagggaagctgaaaataccaggcatgttggcatcatgtcactcaaagccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 actgatggatagggaagctgaaaataccaggcatgttggcatcatgtcactcaaagccct 481
Query: 61 catggtggggaccaccatgatgggctctttctcaacagacaggatgccta-tctatagaa 119
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 480 catggtggggaccaccatgatgggctctttctcaacagacaggatgcctattctatagaa 421
Query: 120 attaagacaccaaaatgttgttactaaatagtctgagcctgttcagtactcttaccaggc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attaagacaccaaaatgttgttactaaatagtctgagcctgttcagtactcttaccaggc 361
Query: 180 aactggtaatgtgtcacatggaaccatccagaactatacctagctggatttccagtggaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aactggtaatgtgtcacatggaaccatccagaactatacctagctggatttccagtggaa 301
Query: 240 atgctggacctttgatgtgaatggagaattaaccatcatccatagttctaccactcagga 299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atgctggacctttgatgtgagtggagaattaaccatcatccatagttctaccactcagga 241
Query: 300 atccctacaatttcgaaggggaagatttaaatcacacctt 339
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atccctacaatttcgaaggggaagatttaaatcacacctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 740
Length adjustment: 9
Effective length of query: 330
Effective length of database: 731
Effective search space: 241230
Effective search space used: 241230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_j18.g1 MSMg01no338_j18.g1 CHROMAT_FILE:
MSMg01no338_j18.g1 PHD_FILE: MSMg01no338_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:16 2005
(555 letters)
>mm_chr2_174375073_174376027
Length = 955
Score = 1044 bits (540), Expect = 0.0
Identities = 552/556 (99%), Gaps = 1/556 (0%)
Strand = Plus / Plus
Query: 1 agtccaagactttggatctggataatccctttgcataata-ttttttttgtttacaagtt 59
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 200 agtccaagactttggatctggataatccctttgcataatatttttttttatttacaagtt 259
Query: 60 cctcacaataaagttttagttaaaaaacaatcttttaaaaaatatgcctcaccctcagtt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cctcacaataaagttttagttaaaaaacaatcttttaaaaaatatgcctcaccctcagtt 319
Query: 120 ggttgaatctttaggtatggagagccaactgtatcctccctccctcctttcttccctccg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggttgaatctttaggtatggagagccaactgtatcctccctccctcctttcttccctccg 379
Query: 180 tcctttccttctttgagaaggaactcttggtgtagcactggctggcctggaactcacaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcctttccttctttgagaaggaactcttggtgtagcactggctggcctggaactcacaat 439
Query: 240 tctcctgcctctgatccttgaactcctgctgagactgcaggtgagagccttgcactcaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctcctgcctctgatccttgaactcctgctgagactgcaggtgagagccttgcactcaca 499
Query: 300 gctttctgatgcacctttcagtgaagccttctccctctgccccccaagaccaattagcca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctttctgatgcacctttcagtgaagccttctccctctgccccccaagaccaattagcca 559
Query: 360 tagtgcctgacactggtgggtgaatggtgacctccctctgcagagaaactgtgaaatgca 419
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tagtgcctgacactggtggatgaatggtgacctccctctgcagagaaactgtgaaatgca 619
Query: 420 gattcgctgttctgttaagcaggagctgtgtaggacgggcaagccctcccccaccatctc 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gattcgctgttctgataagcaggagctgtgtaggacgggcaagccctcccccaccatctc 679
Query: 480 ccttcttcctgaggttgctgctgtccttcatgtttatgacctgtggctgcatccctctct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccttcttcctgaggttgctgctgtccttcatgtttatgacctgtggctgcatccctctct 739
Query: 540 cagctctgcctccatg 555
||||||||||||||||
Sbjct: 740 cagctctgcctccatg 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
