Query= MSMg01no339_d13.b1 MSMg01no339_d13.b1 CHROMAT_FILE:
MSMg01no339_d13.b1 PHD_FILE: MSMg01no339_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:01 2005
(608 letters)
>mm_chr2_171221622_171222629
Length = 1008
Score = 1125 bits (582), Expect = 0.0
Identities = 597/602 (99%), Gaps = 1/602 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttgtctctgtggcataaagtttcacatctacaaaatagtaactgcaggaaag 63
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttgtcactgttgcataaagtttcacatctacaaaatagtaactgcaggaaag 263
Query: 64 catgccatttagaaatgtgcatgccttgtgtggtagtgggccgtacattcaggtgcatgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catgccatttagaaatgtgcatgccttgtgtggtagtgggccgtacattcaggtgcatgt 323
Query: 124 gcacatgtgtgtgctgtttgtggaggtcagaggttagtatcagcggtgctctttgatcca 183
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcacatgtgtgtgctgtatgtggaggtcagaggttagtatcagcggtgctctttgatcca 383
Query: 184 tttctgctttatttttctgagtctgggtgtctcaatgaatcgactgaacaggactgacag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttctgctttatttttctgagtctgggtgtctcaatgaatcgactgaacaggactgacag 443
Query: 244 aaagctcagagatcctcttgtccctgtttgcctggttctggttctgggtctataggcaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaagctcagagatcctcttgtccctgtttgcctggttctggttctgggtctataggcaca 503
Query: 304 ccactacccgtggtttatttttacttgggtgttgggatccgaactcaagctcccatgttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccactacccgtggtttatttttacttgggtgttgggatccgaactcaagctcccatgttt 563
Query: 364 gtacagccaatactttactaacagtcatctctctaggcacagacatgtgcttcttagttt 423
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtacagccaatactt-actaacagtcatctctctaggcacagacatgtgcttcttagttt 622
Query: 424 aattgattactcgggaaattctgttggtaatatctcaaatgtcatttgctggagtttctt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aattgattactcgggaaattctgttggtaatatctcaaatgtcatttgctggagtttctt 682
Query: 484 catcatgagtccctttgatggagaaaggagtccctacctcctatgtcagaaacatgcata 543
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 catcatgagcccctttgatggagaaaggagtccctacctcctatgtcagaaacatgcata 742
Query: 544 gctgtgtgcctctactgctctcagatgctcctctgtgccttgtgagtttggcttaaacaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gctgtgtgcctctactgctctcagatgctcctctgtgccttgtgagtttggcttaaacaa 802
Query: 604 tc 605
||
Sbjct: 803 tc 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_d13.g1 MSMg01no339_d13.g1 CHROMAT_FILE:
MSMg01no339_d13.g1 PHD_FILE: MSMg01no339_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:01 2005
(504 letters)
>mm_chr2_171363817_171364720
Length = 904
Score = 725 bits (375), Expect = 0.0
Identities = 397/409 (97%), Gaps = 8/409 (1%)
Strand = Plus / Minus
Query: 1 tttagtattactgactgataaacatgccaggatccacttgtgtagcctgtctgggctagc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 401 tttagtattactgactgataaacatgccaggatccacgtgtgtagcctgtctgggctagc 342
Query: 61 tcatttggcaagtgagcattctgaacaagtcctgttgaacatcatctaagatcctagact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tcatttggcaagtgagcattctgaacaagtcctgttgaacatcatctaagatcctagact 282
Query: 121 ttatcagaagcatcagcttgcccatcctgtgctgttttgcttaaatgatcttatacattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttatcagaagcatcagcttgcccatcctgtgctgttttgcttaaatgatcttatacattc 222
Query: 181 attgctattaaaaagaaaagggagaccgcagagacagctctgtggttagaagaactttct 240
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 221 attgctattaaaaagaaaagggagaccgcagagacagctctgtggttaggaggactttct 162
Query: 241 gctttccatggacgaaggctcagttcacagaaccatcatattggctcataactctctgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 gctttccatggacgaaggctcagttcacagaaccatcatattggctcataactctctgta 102
Query: 301 acttcggttccaggagatttgatgccctcatctggctcctttgggccctgagtatgtagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 acttcggttccaggagatttgatgccctcatctggctcctttgggccctgagtatgtagt 42
Query: 361 gcctacatcgctcagacatacatgtagacaaacacccctacacataaaa 409
|| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 41 gc--------ctcaaacatacatgtagacaaacacccctacacataaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
